Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.2e-231 804.7 387 100.0
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.1e-226 788.1 388 98.7
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.1e-222 775.4 388 95.9
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 5.6e-220 767.3 389 95.9
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 3.6e-219 764.6 393 94.4
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-218 763.1 389 95.1
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.0e-213 745.0 385 93.8
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.3e-212 741.1 393 92.6
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 9.6e-212 740.0 392 92.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.1e-210 734.9 390 92.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.5e-209 732.6 390 92.1
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 2.6e-209 731.9 390 92.3
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 5.8e-209 730.7 394 91.1
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 5.8e-209 730.7 394 91.1
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 7.6e-209 730.3 390 92.1
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.9e-208 728.4 396 90.4
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.5e-201 706.1 394 89.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 4.5e-201 704.5 389 88.2
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 5.8e-201 704.1 373 91.2
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 8.4e-200 700.3 388 87.4
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.0e-193 679.1 367 91.3
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.2e-192 675.6 367 91.3
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 2.2e-184 649.0 384 83.1
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.1e-183 646.7 394 79.9
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.2e-182 643.3 385 81.8
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.2e-182 643.3 380 83.4
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 2.7e-182 642.1 391 80.6
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 3.5e-182 641.7 389 81.2
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.6e-182 641.3 396 79.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.0e-181 640.2 351 86.3
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.3e-181 639.8 390 80.5
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.8e-181 639.4 395 79.7
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.0e-181 638.6 393 78.9
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.9e-181 638.3 388 79.6
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.9e-181 638.3 397 79.1
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.9e-181 638.3 392 79.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 5.1e-181 637.9 393 79.6
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 5.1e-181 637.9 390 80.3
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 5.1e-181 637.9 382 80.1
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.7e-181 637.5 396 79.0
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 8.7e-181 637.1 350 86.0
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 8.7e-181 637.1 392 79.3
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.1e-180 636.7 388 79.1
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.9e-180 636.0 390 80.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 3.3e-180 635.2 343 88.0
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.3e-180 634.8 363 84.0
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 5.7e-180 634.4 402 78.1
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.7e-180 634.4 390 79.7
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.3e-179 633.3 353 86.1
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.3e-179 633.3 388 80.9
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.6e-179 632.9 390 79.5
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.2e-179 632.5 355 84.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.7e-179 631.7 392 79.6
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 3.7e-179 631.7 345 87.2
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 4.8e-179 631.3 390 79.7
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 8.2e-179 630.6 394 78.7
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.1e-178 630.2 392 79.3
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.4e-178 629.8 370 80.0
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.4e-178 629.0 347 86.2
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.4e-178 629.0 396 77.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 3.1e-178 628.6 396 77.5
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.3e-178 627.9 392 78.6
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 5.3e-178 627.9 388 78.9
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 5.3e-178 627.9 383 78.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 9.0e-178 627.1 385 79.0
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 9.0e-178 627.1 386 79.0
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.2e-177 626.7 385 78.7
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.5e-177 626.3 366 83.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.0e-177 625.9 389 78.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.4e-177 625.2 349 84.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.9e-177 624.4 380 79.5
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 1.0e-176 623.6 399 78.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.7e-176 622.9 340 86.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.1e-175 620.2 402 74.9
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.5e-175 619.0 337 86.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 4.2e-175 618.2 387 77.8
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.2e-174 616.7 388 77.1
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.6e-174 616.3 388 76.5
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 3.6e-174 615.1 386 78.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 6.1e-174 614.4 367 80.7
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.0e-173 613.6 370 79.7
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.8e-173 612.8 396 75.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.8e-173 612.8 390 75.4
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 2.3e-173 612.5 392 76.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 6.7e-173 610.9 394 76.9
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 6.7e-173 610.9 386 76.9
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 1.1e-172 610.1 390 77.4
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.5e-172 609.8 341 85.3
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 2.5e-172 609.0 394 75.1
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 4.3e-172 608.2 361 82.0
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.4e-172 607.4 364 78.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 6.3e-171 604.4 339 85.5
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.8e-170 602.8 399 74.2
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.9e-170 600.9 340 84.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 6.9e-170 600.9 422 71.1
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.2e-169 600.1 367 79.6
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.4e-169 598.6 371 79.2
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 3.4e-169 598.6 408 73.0
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.9e-169 597.8 416 72.6
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.0e-168 597.0 396 74.7
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.0e-168 597.0 338 82.2
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.9e-168 595.5 357 79.8
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-167 592.8 387 74.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.5e-167 591.3 301 90.7
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.8e-165 586.3 308 88.6
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.0e-164 582.8 361 80.1
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.4e-162 575.9 317 86.1
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.3e-160 570.1 370 75.7
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.2e-159 565.5 363 77.1
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.9e-157 558.5 389 72.0
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 5.7e-156 554.7 393 72.8
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.1e-154 550.4 370 72.2
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 4.1e-154 548.5 373 74.0
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 2.0e-153 546.2 393 69.7
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.8e-152 542.0 497 58.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.8e-152 542.0 341 74.5
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.5e-151 539.3 550 54.0
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.2e-151 538.9 366 71.3
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 8.0e-150 534.3 497 58.1
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 4.0e-149 531.9 336 74.1
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.4e-148 528.5 303 79.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-144 515.4 243 97.9
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 4.7e-134 481.9 361 65.4
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 9.8e-132 474.2 312 73.4
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 5.0e-128 461.8 396 62.9
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.2e-122 442.6 344 61.3
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 7.0e-122 441.4 307 66.4
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.4e-116 422.5 288 73.6
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.5e-111 406.4 253 77.9
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.1e-110 401.4 241 80.1
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.4e-106 388.7 212 87.3
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.1e-103 380.9 234 80.8
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.6e-102 375.9 318 58.2
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.5e-100 370.5 339 54.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.1e-96 355.5 260 69.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.1e-90 337.8 204 77.5
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 4.6e-89 332.4 288 54.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 8.4e-67 258.5 391 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-66 258.1 326 42.3
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.2e-65 254.6 127 92.1
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.6e-65 254.2 359 38.7
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.6e-65 254.2 393 39.2
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.1e-65 253.8 331 40.5
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.5e-60 237.7 323 40.6
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.2e-54 217.2 334 38.0
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 6.3e-54 215.7 179 63.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.9e-51 206.8 258 41.1
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.4e-47 192.2 114 82.5
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.0e-43 181.8 188 52.7
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 7.0e-29 132.5 115 66.1
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 4.5e-28 129.8 92 70.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.6e-23 114.0 56 87.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 7.5e-23 112.5 158 42.4
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.0e-19 102.1 62 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 8.6e-19 99.0 164 44.5
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.6e-15 87.4 93 55.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 9.8e-15 85.5 49 77.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 5.0e-11 73.2 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 6.1e-09 66.2 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.8e-07 59.7 31 80.6


User provided reference genes

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