Gene: AT1G02270

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G02270
  • Transcript Identifier AT1G02270.1
  • Gene Type Coding gene
  • Location Chr1 : 443301-446197 : negative

Gene Family Information

  • ID HOM05D002523
  • #Genes/#Species 269/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G02270.1
  • uniprot O81916

Descriptions

  • Description Calcium-binding endonuclease/exonuclease/phosphatase family
  • Computational description Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2); Has 514 Blast hits to 514 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 214; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0009409
IEP
GOA Databaseresponse to cold

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005509
IEA
Gene Ontologycalcium ion binding
GO:0000175
IBA
Gene Ontology3'-5'-exoribonuclease activity1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005634
IDA
GOA Databasenucleus
GO:0005634
HDA
Gene Ontologynucleus2
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
IPR005135 Endonuclease/exonuclease/phosphatase
IPR011992 EF-hand domain pair
Mapman id Description
35.1 not assigned.annotated