Gene: AL4G18360

General Information

Structural Information

Species Arabidopsis lyrata
Gene Identifier AL4G18360
Transcript Identifier AL4G18360.t1
Gene Type Coding gene
Location scaffold_4 : 5777887-5779248 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000327
#Genes/#Species 1418/97
Phylogenetic origin

ID ORTHO05D000218
#Genes/#Species 1364/97
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

id AL4G18360.v2.1
pacid 35924201

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016567	IEA	InterPro	protein ubiquitination
GO:0140547	ISO	PLAZA Integrative Orthology	acquisition of seed longevity	AT2G26130
GO:0000209	ISO	PLAZA Integrative Orthology	protein polyubiquitination	AT2G26130
GO:0010431	ISO	PLAZA Integrative Orthology	seed maturation	AT2G26130
GO:0006511	ISO	PLAZA Integrative Orthology	ubiquitin-dependent protein catabolic process	AT2G26130
GO:0009788	ISO	PLAZA Integrative Orthology	negative regulation of abscisic acid-activated signaling pathway	AT2G26130
GO:0010476	ISO	PLAZA Integrative Orthology	gibberellin mediated signaling pathway	AT2G26130

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0004523	IEA	InterPro	RNA-DNA hybrid ribonuclease activity
GO:0046872	IEA	InterPro	metal ion binding
GO:0004842	IEA	InterPro	ubiquitin-protein transferase activity
GO:0061630	ISO	PLAZA Integrative Orthology	ubiquitin protein ligase activity	AT2G26130
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT2G26130

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009705	ISO	PLAZA Integrative Orthology	plant-type vacuole membrane	AT2G26130
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT2G26130

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR002867	IBR domain
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR002156	Ribonuclease H domain
IPR018957	Zinc finger, C3HC4 RING-type
IPR031127	E3 ubiquitin ligase RBR family
IPR036397	Ribonuclease H superfamily

Mapman id	Description
19.2.2.1.4.4.4	Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RBR-type E3 ligase activities.plant-specific E3 ubiquitin ligase (RSL/RFA)