Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen04g006580 ALWAYS EARLY 4 (ALY4) | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch04 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G2970 LG-2 - View
Aethionema arabicum Aa31LG9G17400 LG-9 + View
Acer truncatum Atru.chr1.1927 chr1 + View
Actinidia chinensis Actinidia06494 Lachesis_group16 + View
Actinidia chinensis Actinidia35730 Lachesis_group25 + View
Actinidia chinensis Actinidia28808 Lachesis_group8 + View
Arabidopsis lyrata AL7G46560 scaffold_7 - View
Arabidopsis lyrata AL2G24000 scaffold_2 - View
Avicennia marina MSTRG.2616 ScioBoG_102835_HRSCAF_103059 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4ZTL4S K12881 - THO complex subunit 4 (THOC4, ALY) arahy.Tifrunner.gnm1.Arahy.17 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.573ERA PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F8UVUT K12881 - THO complex subunit 4 (THOC4, ALY) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BPMY5V PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D arahy.Tifrunner.gnm1.Arahy.07 + View
Arabidopsis thaliana AT5G37720 ALWAYS EARLY 4 ALWAYS EARLY 4 (ALY4)%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleolus%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G66260.2)%3B Has 8810 Blast hits to 7454 proteins in 559 species: Archae - 0%3B Bacteria - 678%3B Metazoa - 4105%3B Fungi - 1555%3B Plants - 1582%3B Viruses - 59%3B Other Eukaryotes - 831 (source: NCBI BLink). ALWAYS EARLY 4 (ALY4)%3B FUNCTIONS IN: nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G66260.2)%3B Has 5809 Blast hits to 5449 proteins in 440 species: Archae - 2%3B Bacteria - 280%3B Metazoa - 2763%3B Fungi - 1142%3B Plants - 1077%3B Viruses - 9%3B Other Eukaryotes - 536 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB06g27126 ChrB06 - View
Brassica carinata BcaC02g09607 ChrC02 - View
Brassica napus C04p44650 C04 - View
Brassica napus A04p10900 A04 - View
Camellia sinensis var. sinensis CSS0037347 THO complex subunit 4-like protein [Mangifera indica] Chr2 + View
Camellia sinensis var. sinensis CSS0039364 PREDICTED: THO complex subunit 4D [Solanum lycopersicum] Chr1 - View
Cicer arietinum L. Ca_17103_v3 Ca_LG6_v3 - View
Corylus avellana Haze_14262 Similar to ALY3: THO complex subunit 4C (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc07_g13450 Putative RNA-binding (RRM/RBD/RNP motifs) family protein chr7 - View
Citrus clementina Ciclev10012354m.g scaffold_6 + View
Ceratophyllum demersum CDE05G2123 3 - View
Carpinus fangiana Cfa007813 Cfa03 - View
Cardamine hirsuta CARHR215120 THO complex subunit 4 Chr7 + View
Carya illinoinensis CiPaw.03G071900 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D Chr03 + View
Carya illinoinensis CiPaw.04G047400 PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D Chr04 + View
Capsella rubella Carub.0002s1226 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D scaffold_2 - View
Capsella rubella Carub.0007s3288 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D scaffold_7 - View
Davidia involucrata Dinv19035 GWHABJS00000014 + View
Davidia involucrata Dinv28203 GWHABJS00000012 - View
Erigeron canadensis ECA238G1431 Conyza_canadensis_scaffold:6 - View
Erythranthe guttata Migut.H02261 scaffold_8 - View
Eutrema salsugineum Thhalv10027861m.g PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D scaffold_14 + View
Eutrema salsugineum Thhalv10018970m.g scaffold_9 - View
Fragaria x ananassa FAN26G1535 PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D Fvb1-2 - View
Glycine max Glyma.11G216200 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D Gm11 - View
Glycine max Glyma.18G040400 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D Gm18 + View
Helianthus annuus HanXRQChr14g0444691 Probable RNA-binding (RRM/RBD/RNP motifs) family protein HanXRQChr14 - View
Hydrangea macrophylla Hma1.2p1_0158F.1_g070180 Hma1.2p1_0158F.1 - View
Lotus japonicus Lj6g0020228 PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D chr6 + View
Lactuca sativa Lsat_1_v5_gn_2_69001 K12881 - THO complex subunit 4 (THOC4, ALY) Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_3_64740 K12881 - THO complex subunit 4 (THOC4, ALY) Lsat_1_v8_lg_3 - View
Malus domestica MD09G1263100 ALWAYS EARLY 4 Chr09 - View
Malus domestica MD17G1258100 ALWAYS EARLY 4 Chr17 - View
Manihot esculenta Manes.02G076900 Chromosome02 + View
Manihot esculenta Manes.01G118500 Chromosome01 + View
Medicago truncatula Medtr3g065490 RNA recognition motif, a.k.a. RRM, RBD protein chr3 - View
Nelumbo nucifera Nn4g24274 chr4 + View
Olea europaea Oeu031140.2 chr7 + View
Olea europaea Oeu002129.1 chr14 - View
Olea europaea Oeu012254.3 chr2 - View
Oryza sativa ssp. japonica Os06g0256200 Similar to THO complex subunit 4. Similar to Keratinocytes proline-rich protein. chr06 - View
Petunia axillaris Peaxi162Scf00305g00056 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00305 - View
Punica granatum PGR042G1980 NC_045130.1 - View
Prunus persica Prupe.3G160800 PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D Pp03 - View
Pisum sativum Psat5g121800 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 + View
Papaver somniferum PSO017G5103 NC_039362.1 - View
Populus trichocarpa Potri.017G129900 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D Chr17 + View
Populus trichocarpa Potri.004G087000 PTHR19965//PTHR19965:SF33 - RNA AND EXPORT FACTOR BINDING PROTEIN // THO COMPLEX SUBUNIT 4D Chr04 - View
Phaseolus vulgaris Phvul.001G230200 PTHR19965:SF33 - THO COMPLEX SUBUNIT 4D Chr01 - View
Quercus lobata QL02p058151 CM012294 + View
Rhododendron simsii Rhsim10G0177300 chr10 + View
Striga asiatica SGA_v2.0_scaffold2G00937 scaffold2 + View
Striga asiatica SGA_v2.0_scaffold108G30956 scaffold108 + View
Salvia bowleyana SalBow3G1877 GWHASIU00000006 - View
Salix brachista Sabra04G0057800 GWHAAZH00000004 - View
Salix brachista Sabra17G0108100 GWHAAZH00000017 + View
Sechium edule Sed0006931 LG05 + View
Solanum lycopersicum Solyc11g011130.3 THO complex subunit 4D (AHRD V3.3 *-* A0A2G2Y4P8_CAPAN) SL4.0ch11 - View
Schrenkiella parvula Sp7g04340 K12881 - THO complex subunit 4 (THOC4, ALY) ch7-1 + View
Solanum tuberosum PGSC0003DMG402015684 ALY protein ST4.03ch11 + View
Trochodendron aralioides TAR629G1868 group0 + View
Trochodendron aralioides TAR371G1013 group13 - View
Trifolium pratense TPR.G24922 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI77G0142 NC_052236.1 + View
Tripterygium wilfordii TWI74G1290 NC_052234.1 + View
Tripterygium wilfordii TWI53G0161 NC_052244.1 - View
Vaccinium macrocarpon vmacro07695 Similar to ALY4: THO complex subunit 4D (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01030785001 chr14 + View