Gene: AT5G37720

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G37720
  • Transcript Identifier AT5G37720.2
  • Gene Type Coding gene
  • Location Chr5 : 14981805-14983978 : negative

Gene Family Information

  • ID HOM05D001365
  • #Genes/#Species 458/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G37720.2
  • symbol ALY4
  • Alias AtALY4,DIP2,interacting with DNA-binding domain of Zn-finger PARP 1
  • uniprot Q6NQ72

Descriptions

  • Description ALWAYS EARLY 4
  • Computational description ALWAYS EARLY 4 (ALY4); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G66260.2); Has 8810 Blast hits to 7454 proteins in 559 species: Archae - 0; Bacteria - 678; Metazoa - 4105; Fungi - 1555; Plants - 1582; Viruses - 59; Other Eukaryotes - 831 (source: NCBI BLink).
  • Computational description ALWAYS EARLY 4 (ALY4); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G66260.2); Has 5809 Blast hits to 5449 proteins in 440 species: Archae - 2; Bacteria - 280; Metazoa - 2763; Fungi - 1142; Plants - 1077; Viruses - 9; Other Eukaryotes - 536 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006406
IBA
Gene OntologymRNA export from nucleus1
GO:0006952
IEA
GOA Databasedefense response
GO:0051028
IEA
GOA DatabasemRNA transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
IDA
Gene Ontologynucleoplasm4
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA, HDA
Gene Ontologynucleolus4 5
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025715 Chromatin target of PRMT1 protein, C-terminal
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.10.1.2.1 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.mRNA export adaptor activities.mRNA-binding adaptor (ALY/Tho4)