Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen07g034150 Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | VARICOSE (VCS) | FUNCTIONS IN: protein homodimerization activity, nucleotide binding | INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis | LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body | EXPRESSED IN: whole plant, guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: varicose-related Spenn-ch07 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr2.3845 chr2 - View
Actinidia chinensis Actinidia03660 Lachesis_group9 + View
Actinidia chinensis Actinidia30365 Lachesis_group10 + View
Actinidia chinensis Actinidia10583 Lachesis_group19 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ADA7T8 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) arahy.Tifrunner.gnm1.Arahy.11 - View
Camellia sinensis var. sinensis CSS0030826 PREDICTED: enhancer of mRNA-decapping protein 4-like [Sesamum indicum] Chr7 - View
Cannabis sativa CANSAT11G0621 NC_044377.1 - View
Corylus avellana Haze_09897 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) 4 + View
Citrus clementina Ciclev10007261m.g scaffold_1 + View
Carpinus fangiana Cfa016942 Cfa07 + View
Corchorus olitorius COL.COLO4_07762 hypothetical protein AWUE01013456.1 + View
Carica papaya Cpa.g.sc27.194 supercontig_27 - View
Davidia involucrata Dinv10376 GWHABJS00000001 + View
Davidia involucrata Dinv40896 GWHABJS00000013 - View
Durio zibethinus Duzib268G1004 NW_019168270.1 - View
Durio zibethinus Duzib213G0425 NW_019167993.1 - View
Eucalyptus grandis Eucgr.F02007 Chr06 - View
Erythranthe guttata Migut.H01726 scaffold_8 - View
Fragaria x ananassa FAN25G1930 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Fvb3-1 + View
Gossypium hirsutum Gohir.D08G036200 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) D08 + View
Gossypium hirsutum Gohir.A08G025700 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) A08 + View
Gossypium raimondii Gorai.004G034200 Chr04 + View
Hydrangea macrophylla Hma1.2p1_0193F.1_g084140 Hma1.2p1_0193F.1 + View
Lotus japonicus Lj6g0010416 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) chr6 - View
Lonicera japonica Lj1A897T44 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_7_116441 Lsat_1_v8_lg_7 - View
Lactuca sativa Lsat_1_v5_gn_9_89380 Lsat_1_v8_lg_9 - View
Malus domestica MD03G1039800 Transducin/WD40 repeat-like superfamily protein Chr03 + View
Nicotiana tabacum Nitab4.5_0000152g0190 WD40-repeat-containing domain, WD40 repeat, WD40/YVTN repeat-like-containing domain Nitab4.5_0000152 - View
Papaver somniferum PSO675G0267 NC_039358.1 - View
Quercus lobata QL08p001531 8 - View
Rhododendron simsii Rhsim04G0009400 chr04 - View
Striga asiatica SGA_v2.0_scaffold42G15938 scaffold42 - View
Striga asiatica SGA_v2.0_scaffold8G04429 scaffold8 + View
Solanum lycopersicum Solyc07g065950.4 enhancer of mRNA-decapping protein 4-like (AHRD V3.3 *-* A0A2I4F2H1_9ROSI) SL4.0ch07 + View
Solanum lycopersicum Solyc10g005920.4 enhancer of mRNA-decapping protein 4-like (AHRD V3.3 *** A0A2I4F2H1_9ROSI) SL4.0ch10 + View
Trochodendron aralioides TAR626G0018 group3 - View
Vaccinium macrocarpon vmacro09608 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vanilla planifolia HPP92_017870 Enhancer of mRNA-decapping protein 4 *** CM028158.1 - View
Vitis vinifera GSVIVG01014783001 chr19 - View