Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen05g004320 This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. | anti- silencing function 1b (ASF1B) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | LOCATED IN: nucleus | EXPRESSED IN: 20 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like | BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone Spenn-ch05 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G3210 LG-2 + View
Acer truncatum Atru.chr11.351 chr11 - View
Arabidopsis lyrata AL7G52790 scaffold_7 - View
Arabidopsis lyrata AL2G24900 scaffold_2 + View
Avicennia marina MSTRG.2197 ScioBoG_102834_HRSCAF_103055 + View
Aquilegia oxysepala Aqoxy3G03986 CHR03 - View
Arabidopsis thaliana AT5G38110 anti- silencing function 1b This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. Its expression is regulated during cell cycle progression through E2F transcription factors. anti- silencing function 1b (ASF1B)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: DNA mediated transformation%2C nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: nucleus%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 9 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone chaperone%2C ASF1-like (InterPro:IPR006818)%3B BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT1G66740 ASF1 like histone chaperone Located on the SSL2 region of Arabidopsis thaliana%2C which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility. Its expression is regulated during cell cycle progression through E2F transcription factors. The protein interacts with acetylated histones H3 and H4 and HAM acetyltransferases%2C proteins known to be involved in cell cycle control and DNA repair. SGA2%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: chromatin assembly or disassembly%2C nucleobase%2C nucleoside%2C nucleotide and nucleic acid metabolic process%3B LOCATED IN: endomembrane system%2C nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone chaperone%2C ASF1-like (InterPro:IPR006818)%3B BEST Arabidopsis thaliana protein match is: anti- silencing function 1b (TAIR:AT5G38110.1)%3B Has 608 Blast hits to 608 proteins in 232 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 247%3B Fungi - 167%3B Plants - 75%3B Viruses - 0%3B Other Eukaryotes - 119 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB03g15236 ChrB03 - View
Brassica napus A07p33570 A07 + View
Brassica oleracea BolC6t39092H C6 + View
Brassica rapa BraA07t30984Z A07 + View
Camellia sinensis var. sinensis CSS0024651 PREDICTED: histone chaperone ASF1B [Eucalyptus grandis] Chr2 + View
Capsicum annuum CAN.G625.64 PGAv.1.6.scaffold625 - View
Coffea canephora Cc07_g08420 Histone chaperone ASF1B chr7 + View
Coffea canephora Cc11_g09190 Histone chaperone ASF1B chr11 + View
Citrus clementina Ciclev10012845m.g scaffold_6 + View
Citrus clementina Ciclev10016840m.g scaffold_2 + View
Ceratophyllum demersum CDE06G2273 4 - View
Ceratophyllum demersum CDE07G0461 5 - View
Carpinus fangiana Cfa007879 Cfa03 + View
Cardamine hirsuta CARHR214630 ASF1 like histone chaperone Chr7 - View
Cardamine hirsuta CARHR058840 ASF1 like histone chaperone Chr2 + View
Carya illinoinensis CiPaw.06G014900 K10753 - histone chaperone ASF1 (ASF1) Chr06 + View
Carya illinoinensis CiPaw.03G065900 K10753 - histone chaperone ASF1 (ASF1) Chr03 - View
Carya illinoinensis CiPaw.05G245900 K10753 - histone chaperone ASF1 (ASF1) Chr05 - View
Carica papaya Cpa.g.sc170.14 supercontig_170 + View
Capsella rubella Carub.0005s1240 K10753 - histone chaperone ASF1 (ASF1) scaffold_5 + View
Capsella rubella Carub.0002s1296 K10753 - histone chaperone ASF1 (ASF1) scaffold_2 + View
Daucus carota DCAR_025890 hypothetical protein DCARv2_Chr7 + View
Daucus carota DCAR_023620 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv04896 GWHABJS00000008 + View
Durio zibethinus Duzib211G0555 NW_019168049.1 + View
Erigeron canadensis ECA246G0374 Conyza_canadensis_scaffold:8 + View
Eucalyptus grandis Eucgr.F02799 Chr06 - View
Erythranthe guttata Migut.H00251 scaffold_8 - View
Erythranthe guttata Migut.E00395 scaffold_5 - View
Eutrema salsugineum Thhalv10019161m.g K10753 - histone chaperone ASF1 (ASF1) scaffold_9 + View
Eutrema salsugineum Thhalv10027833m.g K10753 - histone chaperone ASF1 (ASF1) scaffold_14 - View
Helianthus annuus HanXRQChr12g0376011 Probable ASF1 like histone chaperone HanXRQChr12 + View
Hydrangea macrophylla Hma1.2p1_0500F.1_g167100 Hma1.2p1_0500F.1 + View
Lonicera japonica Lj4A181G29 GWHAAZE00000004 + View
Lonicera japonica Lj2C437T9 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_3_82901 K10753 - histone chaperone ASF1 (ASF1) Lsat_1_v8_lg_3 - View
Malus domestica MD09G1258300 anti -silencing function 1b Chr09 - View
Manihot esculenta Manes.02G072500 Chromosome02 - View
Manihot esculenta Manes.01G113900 Chromosome01 - View
Nelumbo nucifera Nn3g18016 chr3 - View
Nelumbo nucifera Nn4g24038 chr4 - View
Nicotiana tabacum Nitab4.5_0000036g0580 Histone chaperone, ASF1-like Nitab4.5_0000036 + View
Nicotiana tabacum Nitab4.5_0002456g0030 Histone chaperone, ASF1-like Nitab4.5_0002456 - View
Olea europaea Oeu047434.1 chr18 + View
Olea europaea Oeu061825.1 chr10 - View
Oryza sativa ssp. japonica Os01g0685200 Similar to anti-silencing protein 1. chr01 - View
Petunia axillaris Peaxi162Scf00205g00930 ASF1 like histone chaperone Peaxi162Scf00205 + View
Punica granatum PGR004G2100 NC_045131.1 + View
Prunus persica Prupe.1G320600 K10753 - histone chaperone ASF1 (ASF1) Pp01 - View
Prunus persica Prupe.3G150200 K10753 - histone chaperone ASF1 (ASF1) Pp03 - View
Populus trichocarpa Potri.004G094400 K10753 - histone chaperone ASF1 (ASF1) Chr04 + View
Populus trichocarpa Potri.017G121100 K10753 - histone chaperone ASF1 (ASF1) Chr17 - View
Quercus lobata QL01p002834 1 + View
Quercus lobata QL02p049314 CM012294 + View
Rhododendron simsii Rhsim10G0074400 chr10 - View
Striga asiatica SGA_v2.0_scaffold49G18124 scaffold49 - View
Striga asiatica SGA_v2.0_scaffold202G41481 scaffold202 - View
Salvia bowleyana SalBow3G0937 GWHASIU00000006 + View
Salvia bowleyana SalBow3G0108 GWHASIU00000006 + View
Salix brachista Sabra04G0063700 GWHAAZH00000004 + View
Solanum lycopersicum Solyc02g091110.3 Histone chaperone (AHRD V3.3 *** A9TVI5_PHYPA) SL4.0ch02 - View
Solanum lycopersicum Solyc05g008480.4 Histone chaperone (AHRD V3.3 *-* A9U2F4_PHYPA) SL4.0ch05 + View
Schrenkiella parvula Sp5g21700 K10753 - histone chaperone ASF1 (ASF1) ch5-5 + View
Schrenkiella parvula Sp7g03970 K10753 - histone chaperone ASF1 (ASF1) ch7-1 - View
Solanum tuberosum PGSC0003DMG400030634 Anti-silencing protein ST4.03ch02 - View
Solanum tuberosum PGSC0003DMG400030514 Histone chaperone ASF1A ST4.03ch05 - View
Trochodendron aralioides TAR629G1724 group0 - View
Trochodendron aralioides TAR622G0352 group8 + View
Trochodendron aralioides TAR374G0893 group12 + View
Theobroma cacao Thecc.04G126000 Histone chaperone ASF1A Chromosome_4 + View
Tarenaya hassleriana THA.LOC104822568 histone chaperone ASF1B NW_010960187.1 + View
Tripterygium wilfordii TWI53G1866 NC_052244.1 + View
Tripterygium wilfordii TWI74G0399 NC_052234.1 - View
Vaccinium macrocarpon vmacro05489 Similar to ASF1A: Probable histone chaperone ASF1A (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01011798001 chr1 - View
Vitis vinifera GSVIVG01030943001 chr14 + View