Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G15760 LG-3 - View
Acer truncatum Atru.chr7.2327 chr7 - View
Actinidia chinensis Actinidia13287 Lachesis_group18 + View
Actinidia chinensis Actinidia15709 Lachesis_group27 + View
Arabidopsis lyrata AL6G37320 scaffold_6 + View
Arabidopsis lyrata AL4G17160 scaffold_4 + View
Arabidopsis lyrata AL6G22090 scaffold_6 + View
Avicennia marina MSTRG.14000 ScioBoG_18778_HRSCAF_18863 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YCI793 PTHR11477:SF17 - PROTEIN PARTNER OF SNF arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8TMD5Z PTHR11477:SF17 - PROTEIN PARTNER OF SNF arahy.Tifrunner.gnm1.Arahy.18 - View
Arabidopsis thaliana AT5G11430 SPOC domain / Transcription elongation factor S-II protein SPOC domain / Transcription elongation factor S-II protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC%2C C-terminal (InterPro:IPR012921)%2C Transcription elongation factor S-IIM (InterPro:IPR017890)%2C Transcription elongation factor S-II%2C central domain (InterPro:IPR003618)%3B BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G25520.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT5G25520 SPOC domain / Transcription elongation factor S-II protein SPOC domain / Transcription elongation factor S-II protein%3B INVOLVED IN: transcription%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC%2C C-terminal (InterPro:IPR012921)%2C Transcription elongation factor S-II%2C central domain (InterPro:IPR003618)%3B BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1)%3B Has 2128 Blast hits to 1752 proteins in 300 species: Archae - 0%3B Bacteria - 197%3B Metazoa - 863%3B Fungi - 365%3B Plants - 186%3B Viruses - 5%3B Other Eukaryotes - 512 (source: NCBI BLink). Chr5 + View
Arabidopsis thaliana AT2G25640 SPOC domain / Transcription elongation factor S-II protein SPOC domain / Transcription elongation factor S-II protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 6 growth stages%3B CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC%2C C-terminal (InterPro:IPR012921)%2C Transcription elongation factor S-IIM (InterPro:IPR017890)%2C Transcription elongation factor S-II%2C central domain (InterPro:IPR003618)%3B BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1)%3B Has 1179 Blast hits to 1045 proteins in 235 species: Archae - 0%3B Bacteria - 202%3B Metazoa - 503%3B Fungi - 239%3B Plants - 160%3B Viruses - 0%3B Other Eukaryotes - 75 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaC04g19228 ChrC04 - View
Brassica carinata BcaB08g37060 ChrB08 - View
Brassica napus C09p65430 C09 - View
Brassica napus A06p36230 A06 + View
Brassica oleracea BolC7t44759H C7 - View
Brassica rapa BraA06t26545Z A06 + View
Beta vulgaris EL10Ac2g02541 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Chr2_EL10_PGA_scaffold6 - View
Camellia sinensis var. sinensis CSS0021250 PREDICTED: uncharacterized protein LOC100267937 [Vitis vinifera] Chr14 + View
Cannabis sativa CANSAT25G0565 NC_044370.1 - View
Cicer arietinum L. Ca_15699_v3 Ca_LG5_v3 - View
Corylus avellana Haze_21621 Similar to TFIIS: Transcription elongation factor TFIIS (Arabidopsis thaliana OX%3D3702) 3 + View
Coffea canephora Cc08_g08330 Putative SPOC domain / Transcription elongation factor S-II protein chr8 - View
Citrus clementina Ciclev10007403m.g scaffold_1 + View
Ceratophyllum demersum CDE07G1548 5 + View
Ceratophyllum demersum CDE06G1195 4 - View
Carpinus fangiana Cfa013207 Cfa05 + View
Cardamine hirsuta CARHR201800 Transcription elongation factor s-II, putative Chr6 - View
Cardamine hirsuta CARHR187860 SPOC domain / Transcription elongation factor S-II protein Chr6 - View
Carya illinoinensis CiPaw.07G217900 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Chr07 - View
Carya illinoinensis CiPaw.08G015500 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Chr08 + View
Citrullus lanatus ClCG05G017190 Transcription elongation factor A protein CG_Chr05 + View
Cucumis melo MELO3C003671.2 SPOC domain/transcription elongation factor S-II, putative chr04 - View
Corchorus olitorius COL.COLO4_24054 hypothetical protein AWUE01018424.1 + View
Carica papaya Cpa.g.sc91.11 supercontig_91 - View
Chenopodium quinoa AUR62024841 PHF3: PHD finger protein 3 C_Quinoa_Scaffold_1516 - View
Chenopodium quinoa AUR62032378 PHF3: PHD finger protein 3 C_Quinoa_Scaffold_4087 + View
Capsella rubella Carub.0006s2338 PTHR11477:SF17 - PROTEIN PARTNER OF SNF scaffold_6 + View
Cucumis sativus L. CsaV3_3G046670 PHD finger protein 3 chr3 + View
Davidia involucrata Dinv30213 GWHABJS00000003 - View
Durio zibethinus Duzib150G0475 NW_019167882.1 - View
Durio zibethinus Duzib187G0318 NW_019167860.1 + View
Durio zibethinus Duzib168G1962 NW_019168159.1 + View
Erigeron canadensis ECA233G2849 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.C01815 Chr03 - View
Erythranthe guttata Migut.A00276 scaffold_1 - View
Eutrema salsugineum Thhalv10012648m.g PTHR11477:SF17 - PROTEIN PARTNER OF SNF scaffold_2 + View
Eutrema salsugineum Thhalv10000617m.g KOG1634 - Predicted transcription factor DATF1, contains PHD and TFS2M domains scaffold_15 + View
Fragaria x ananassa FAN15G0271 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Fvb2-4 + View
Fragaria x ananassa FAN24G3197 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Fvb2-2 - View
Fragaria x ananassa FAN27G2221 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Fvb2-1 + View
Fragaria x ananassa FAN20G1668 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Fvb2-3 - View
Fragaria vesca FvH4_2g30140 PTHR11477//PTHR11477:SF17//PTHR11477:SF8 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF // SUBFAMILY NOT NAMED Fvb2 + View
Gossypium hirsutum Gohir.D05G011200 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF D05 + View
Gossypium hirsutum Gohir.A05G010400 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF A05 + View
Glycine max Glyma.06G073200 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Gm06 + View
Glycine max Glyma.04G071900 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Gm04 + View
Gossypium raimondii Gorai.009G011500 Chr09 + View
Lupinus albus Lalb_Chr08g0243801 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Lalb_Chr08 - View
Lupinus albus Lalb_Chr11g0063981 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF Lalb_Chr11 + View
Lotus japonicus Lj1g0004393 PTHR11477//PTHR11477:SF17 - TRANSCRIPTION ELONGATION FACTOR S-II // PROTEIN PARTNER OF SNF chr1 - View
Lonicera japonica Lj7A713T53 GWHAAZE00000007 - View
Lactuca sativa Lsat_1_v5_gn_6_10880 Lsat_1_v8_lg_6 + View
Malus domestica MD08G1136900 SPOC domain / Transcription elongation factor S-II protein Chr08 - View
Malus domestica MD15G1115600 SPOC domain / Transcription elongation factor S-II protein Chr15 - View
Manihot esculenta Manes.03G065000 Chromosome03 - View
Medicago truncatula Medtr3g108010 SPOC domain/transcription elongation factor S-II, putative chr3 + View
Nelumbo nucifera Nn2g11838 chr2 - View
Oryza sativa ssp. japonica Os02g0208600 Transcription elongation factor S-II, central region domain containing protein. chr02 + View
Pisum sativum Psat5g027640 Transcription factor S-II (TFIIS) + central domain chr5LG3 + View
Populus trichocarpa Potri.018G034500 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Chr18 + View
Populus trichocarpa Potri.006G246800 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Chr06 - View
Phaseolus vulgaris Phvul.009G097700 PTHR11477:SF17 - PROTEIN PARTNER OF SNF Chr09 + View
Quercus lobata QL12p031313 12 - View
Rosa chinensis RcHm_v2.0_Chr6g0312791 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim02G0187500 chr02 - View
Striga asiatica SGA_v2.0_scaffold27G11488 scaffold27 + View
Salvia bowleyana SalBow4G2455 GWHASIU00000008 - View
Salvia bowleyana SalBow8G2039 GWHASIU00000004 - View
Salix brachista Sabra06G0193100 GWHAAZH00000006 - View
Salix brachista Sabra18G0035100 GWHAAZH00000018 + View
Sechium edule Sed0012229 LG13 + View
Sechium edule Sed0020655 LG05 - View
Sapria himalayana SHI18615 scaffold28_7511268 - View
Schrenkiella parvula Sp6g32170 PTHR11477:SF17 - PROTEIN PARTNER OF SNF ch6-6 - View
Schrenkiella parvula Sp4g05210 KOG1634 - Predicted transcription factor DATF1, contains PHD and TFS2M domains ch4-2 + View
Trochodendron aralioides TAR383G1012 group10 + View
Theobroma cacao Thecc.09G144400 SPOC domain / Transcription elongation factor S-II protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104819888 uncharacterized protein LOC104819888 NW_010966177.1 + View
Tarenaya hassleriana THA.LOC104815043 uncharacterized protein LOC104815043 isoform X2 NW_010965541.1 + View
Tarenaya hassleriana THA.LOC104799220 uncharacterized protein LOC104799220 NW_010968505.1 - View
Trifolium pratense TPR.G34688 Tp57577_TGAC_v2_scaf_600 - View
Tripterygium wilfordii TWI32G0172 NC_052254.1 - View
Vaccinium macrocarpon vmacro05445 Similar to PHF3: PHD finger protein 3 (Homo sapiens OX%3D9606) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro11116 Similar to PHF3: PHD finger protein 3 (Homo sapiens OX%3D9606) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G0300 CM024072.1 - View
Vitis vinifera GSVIVG01035723001 chr4 + View