Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold186G40218 scaffold186 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G1900 LG-4 - View
Aethionema arabicum Aa31LG7G1130 LG-7 + View
Actinidia chinensis Actinidia07350 Lachesis_group10 + View
Arabidopsis lyrata AL1G28770 scaffold_1 - View
Avicennia marina MSTRG.7059 ScioBoG_102840_HRSCAF_103099 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K2PXHZ K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) arahy.Tifrunner.gnm1.Arahy.07 - View
Arabidopsis thaliana AT1G16610 arginine/serine-rich 45 Encodes SR45%2C a member of the highly conserved family of serine/arginine-rich (SR) proteins%2C which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein%2C interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth. arginine/serine-rich 45 (SR45)%3B FUNCTIONS IN: protein binding%2C RNA binding%3B INVOLVED IN: sugar mediated signaling pathway%2C nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nucleoplasm%2C nuclear speck%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related (TAIR:AT1G79100.1)%3B Has 62425 Blast hits to 38843 proteins in 1486 species: Archae - 39%3B Bacteria - 6019%3B Metazoa - 27409%3B Fungi - 8585%3B Plants - 6560%3B Viruses - 1329%3B Other Eukaryotes - 12484 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G79100 arginine/serine-rich protein-like protein arginine/serine-rich protein-related%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich 45 (TAIR:AT1G16610.1)%3B Has 42 Blast hits to 42 proteins in 11 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 41%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr1 + View
Brassica napus A06p12590 A06 - View
Brassica napus C05p14890 C05 - View
Brassica oleracea BolC5t30204H C5 - View
Brassica rapa BraA06t24421Z A06 - View
Camellia sinensis var. sinensis CSS0017399 arginine/serine-rich family protein [Populus trichocarpa] Chr5 + View
Cannabis sativa CANSAT80G2747 NC_044372.1 - View
Cicer arietinum L. Ca_03677_v3 Ca_LG1_v3 - View
Coffea canephora Cc05_g16060 Hypothetical protein chr5 + View
Cardamine hirsuta CARHR017080 RNA binding protein, putative Chr1 - View
Citrullus lanatus ClCG11G016430 Serine/arginine rich splicing factor, putative CG_Chr11 + View
Capsella rubella Carub.0001s1636 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) scaffold_1 - View
Cucumis sativus L. CsaV3_4G031880 RNA-binding protein with serine-rich domain 1 chr4 + View
Daucus carota DCAR_013738 hypothetical protein DCARv2_Chr4 + View
Daucus carota DCAR_016821 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv19619 GWHABJS00000001 + View
Davidia involucrata Dinv42511 GWHABJS00000013 - View
Durio zibethinus Duzib268G1788 NW_019168270.1 - View
Durio zibethinus Duzib187G0607 NW_019167860.1 - View
Durio zibethinus Duzib213G1032 NW_019167993.1 - View
Erythranthe guttata Migut.M01557 scaffold_13 - View
Eutrema salsugineum Thhalv10007778m.g K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) scaffold_5 + View
Fragaria x ananassa FAN21G1113 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Fvb3-2 - View
Gossypium hirsutum Gohir.D01G026750 KOG0107 - Alternative splicing factor SRp20/9G8 (RRM superfamily) D01 + View
Gossypium hirsutum Gohir.A01G039100 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) A01 + View
Glycine max Glyma.08G172000 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) Gm08 + View
Glycine max Glyma.15G255400 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) Gm15 + View
Gossypium raimondii Gorai.002G036200 Chr02 + View
Hydrangea macrophylla Hma1.2p1_0334F.1_g128770 Hma1.2p1_0334F.1 - View
Lupinus albus Lalb_Chr25g0284971 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) Lalb_Chr25 - View
Lupinus albus Lalb_Chr20g0108761 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) Lalb_Chr20 - View
Lotus japonicus Lj3g0001441 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) chr3 + View
Lonicera japonica Lj8A188G51 GWHAAZE00000008 + View
Malus domestica MD10G1202400 arginine/serine-rich 45 Chr10 + View
Manihot esculenta Manes.06G171800 Chromosome06 + View
Manihot esculenta Manes.14G016200 Chromosome14 - View
Olea europaea Oeu052006.1 chr13 - View
Punica granatum PGR031G1019 NC_045127.1 - View
Prunus persica Prupe.4G139800 Pp04 - View
Phaseolus vulgaris Phvul.005G056900 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) Chr05 + View
Rosa chinensis RcHm_v2.0_Chr5g0026571 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim06G0238800 chr06 + View
Salvia bowleyana SalBow8G4928 GWHASIU00000004 - View
Solanum lycopersicum Solyc10g005590.4 Serine/arginine-rich-splicing factor SR45 (AHRD V3.3 *-* A0A0M9UMR7_NICAT) SL4.0ch10 - View
Schrenkiella parvula Sp1g14750 K14325 - RNA-binding protein with serine-rich domain 1 (RNPS1) ch1-1 - View
Solanum pennellii Sopen10g001560 Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth. | arginine/serine-rich 45 (SR45) | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: arginine/serine-rich protein-related . Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400011240 Arginine/serine-rich protein ST4.03ch10 - View
Tripterygium wilfordii TWI38G1616 NC_052252.1 - View
Tripterygium wilfordii TWI39G0564 NC_052250.1 + View
Utricularia gibba unitig_748.g7636 unitig_748 - View
Vaccinium macrocarpon vmacro11663 Similar to SR45: Serine/arginine-rich splicing factor SR45 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G1161 CM024079.1 - View