Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold130G34237 scaffold130 - View
SGA_v2.0_scaffold73G24353 scaffold73 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia04593 Lachesis_group5 + View
Actinidia chinensis Actinidia35178 Lachesis_group2 - View
Actinidia chinensis Actinidia12839 Lachesis_group19 - View
Avicennia marina MSTRG.15007 ScioBoG_19538_HRSCAF_19626 + View
Avicennia marina MSTRG.14274 ScioBoG_18782_HRSCAF_18867 + View
Brassica carinata BcaC08g44103 ChrC08 + View
Brassica rapa BraA03t13033Z A03 + View
Camellia sinensis var. sinensis CSS0028416 PREDICTED: polyadenylate-binding protein-interacting protein 8-like isoform X4 [Solanum lycopersicum] Chr7 - View
Capsicum annuum CAN.G1003.8 PGAv.1.6.scaffold1003 - View
Cannabis sativa CANSAT56G1515 NC_044371.1 + View
Corylus avellana Haze_08495 Similar to CID9: Polyadenylate-binding protein-interacting protein 9 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g10230 CTC-interacting domain 9 chr5 + View
Citrus clementina Ciclev10021336m.g scaffold_3 + View
Citrullus lanatus ClCG07G010530 CTC-interacting domain 9 protein CG_Chr07 - View
Cucumis melo MELO3C016159.2 polyadenylate-binding protein-interacting protein 9 isoform X1 chr07 - View
Daucus carota DCAR_019637 hypothetical protein DCARv2_Chr5 - View
Daucus carota DCAR_021058 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_017565 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv26664 GWHABJS00000013 - View
Davidia involucrata Dinv13308 GWHABJS00000001 + View
Durio zibethinus Duzib268G1699 NW_019168270.1 - View
Durio zibethinus Duzib213G0691 NW_019167993.1 - View
Erigeron canadensis ECA236G4998 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA234G0342 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.F03200 Chr06 + View
Erythranthe guttata Migut.H02073 scaffold_8 + View
Erythranthe guttata Migut.M00654 scaffold_13 - View
Fragaria x ananassa FAN21G0920 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3-2 - View
Fragaria x ananassa FAN11G0486 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3-4 + View
Gossypium hirsutum Gohir.A01G041600 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) A01 + View
Glycine max Glyma.15G249900 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Gm15 - View
Lupinus albus Lalb_Chr25g0285371 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Lalb_Chr25 + View
Lotus japonicus Lj3g0001281 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) chr3 - View
Lonicera japonica Lj1A809G31 GWHAAZE00000001 + View
Lonicera japonica Lj8A141G33 GWHAAZE00000008 + View
Lactuca sativa Lsat_1_v5_gn_7_101481 Lsat_1_v8_lg_7 + View
Manihot esculenta Manes.15G102100 Chromosome15 - View
Medicago truncatula Medtr2g070540 CTC-interacting domain protein chr2 + View
Nicotiana tabacum Nitab4.5_0002209g0160 Nucleotide-binding, alpha-beta plait, RNA recognition motif domain, Ataxin-2, C-terminal Nitab4.5_0002209 + View
Petunia axillaris Peaxi162Scf00111g00821 CTC-interacting domain 9 Peaxi162Scf00111 + View
Punica granatum PGR031G3040 NC_045127.1 + View
Prunus persica Prupe.4G149200 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Pp04 - View
Populus trichocarpa Potri.001G377500 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Chr01 + View
Rhododendron simsii RhsimUnG0204200 ctg509 + View
Salvia bowleyana SalBow7G2970 GWHASIU00000005 - View
Solanum lycopersicum Solyc07g056590.3 Polyadenylate-binding protein-interacting protein 9 (AHRD V3.3 *** A0A2G2WEN6_CAPBA) SL4.0ch07 + View
Solanum pennellii Sopen07g029940 RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain. | CTC-interacting domain 9 (CID9) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 8 Spenn-ch07 + View
Solanum tuberosum PGSC0003DMG400021249 RNA-binding protein ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400027650 Ctc-interacting domain 9 ST4.03ch07 + View
Trochodendron aralioides TAR627G0222 group6 + View
Theobroma cacao Thecc.07G146900 CTC-interacting domain 9 Chromosome_7 - View
Tarenaya hassleriana THA.LOC104810411 polyadenylate-binding protein-interacting protein 9 NW_010965216.1 + View
Vaccinium macrocarpon vmacro12017 Similar to CID9: Polyadenylate-binding protein-interacting protein 9 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View