Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold122G33323 scaffold122 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G1310 LG-8 + View
Acer truncatum Atru.chr1.4067 chr1 + View
Actinidia chinensis Actinidia24719 Lachesis_group9 - View
Actinidia chinensis Actinidia26017 Lachesis_group2 - View
Actinidia chinensis Actinidia32199 Lachesis_group27 + View
Actinidia chinensis Actinidia21799 Lachesis_group1 - View
Arabidopsis lyrata AL3G26310 scaffold_3 + View
Avicennia marina MSTRG.4547 ScioBoG_102837_HRSCAF_103074 - View
Avicennia marina MSTRG.9527 ScioBoG_12795_HRSCAF_12848 + View
Amaranthus hybridus Ah.15g095210 Sm-like protein LSM1B (AtLSM1b) AmaHy_arrow1_Scaffold_15 - View
Aquilegia oxysepala Aqoxy7G01015 CHR07 - View
Arabidopsis thaliana AT3G14080 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1)%3B Has 1121 Blast hits to 1119 proteins in 232 species: Archae - 63%3B Bacteria - 0%3B Metazoa - 413%3B Fungi - 327%3B Plants - 207%3B Viruses - 0%3B Other Eukaryotes - 111 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaB04g18817 ChrB04 - View
Brassica carinata BcaC01g03959 ChrC01 + View
Brassica carinata BcaC05g29125 ChrC05 - View
Brassica napus A03p38610 A03 - View
Brassica napus C05p53550 C05 - View
Brassica napus A05p35360 A05 - View
Brassica napus C01p50500 C01 - View
Brassica oleracea BolC1t05001H C1 - View
Brassica oleracea BolC5t34032H C5 - View
Brassica oleracea BolC3t16937H C3 - View
Brassica rapa BraA01t03996Z A01 - View
Brassica rapa BraA05t22346Z A05 - View
Brassica rapa BraA03t13008Z A03 - View
Beta vulgaris EL10Ac7g16437 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0020609 PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Vitis vinifera] Chr15 - View
Capsicum annuum CAN.G862.46 PGAv.1.6.scaffold862 - View
Capsicum annuum CAN.G825.2 PGAv.1.6.scaffold825 - View
Cannabis sativa CANSAT56G3780 NC_044371.1 + View
Cicer arietinum L. Ca_23402_v3 Ca_LG7_v3 + View
Corylus avellana Haze_16059 Similar to LSM1B: Sm-like protein LSM1B (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc04_g01120 Small nuclear ribonucleoprotein family protein chr4 - View
Citrus clementina Ciclev10026767m.g scaffold_7 + View
Carpinus fangiana Cfa003516 Cfa01 - View
Cardamine hirsuta CARHR088940 Small nuclear ribonucleoprotein LSM1 Chr3 + View
Carya illinoinensis CiPaw.02G134200 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr02 - View
Carya illinoinensis CiPaw.01G216600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr01 - View
Citrullus lanatus ClCG07G014510 U6 snRNA-associated Sm-like protein LSm1 CG_Chr07 - View
Cucumis melo MELO3C024338.2 Small nuclear ribonucleoprotein chr01 - View
Cucumis melo MELO3C030863.2 sm-like protein LSM1B chr04 + View
Carica papaya Cpa.g.sc25.142 supercontig_25 + View
Chenopodium quinoa AUR62001450 LSM1B: Sm-like protein LSM1B C_Quinoa_Scaffold_2716 - View
Chenopodium quinoa AUR62009915 Protein of unknown function C_Quinoa_Scaffold_2493 + View
Capsella rubella Carub.0003s1369 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) scaffold_3 + View
Cucumis sativus L. CsaV3_7G034290 Sm-like protein chr7 - View
Daucus carota DCAR_007651 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv37851 GWHABJS00000006 + View
Durio zibethinus Duzib160G0276 NW_019168015.1 + View
Durio zibethinus Duzib150G1338 NW_019167882.1 - View
Durio zibethinus Duzib187G1652 NW_019167860.1 + View
Durio zibethinus Duzib235G0799 NW_019167982.1 + View
Erigeron canadensis ECA232G4514 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.J02801 Chr10 - View
Erythranthe guttata Migut.I01097 scaffold_9 + View
Erythranthe guttata Migut.D00930 scaffold_4 - View
Eutrema salsugineum Thhalv10021763m.g K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) scaffold_13 - View
Fragaria x ananassa FAN05G2411 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb6-3 - View
Fragaria x ananassa FAN14G3281 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb6-1 - View
Fragaria vesca FvH4_6g35080 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Fvb6 + View
Gossypium hirsutum Gohir.A06G078000 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) A06 + View
Gossypium hirsutum Gohir.D05G035800 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED D05 + View
Gossypium hirsutum Gohir.A05G139400 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) A05 - View
Gossypium hirsutum Gohir.A05G034400 PTHR15588//PTHR15588:SF10 - LSM1 // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.D05G141600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) D05 - View
Gossypium hirsutum Gohir.A07G015600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) A07 + View
Gossypium hirsutum Gohir.D07G015300 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) D07 + View
Glycine max Glyma.16G009500 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Gm16 + View
Glycine max Glyma.07G040900 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Gm07 + View
Gossypium raimondii Gorai.009G036400 Chr09 + View
Gossypium raimondii Gorai.001G016100 Chr01 + View
Gossypium raimondii Gorai.009G145700 Chr09 - View
Helianthus annuus HanXRQChr04g0094351 Probable small nuclear ribonucleoprotein family protein HanXRQChr04 + View
Helianthus annuus HanXRQChr09g0277061 Probable U6 snRNA-associated Sm-like protein LSm1 HanXRQChr09 + View
Hydrangea macrophylla Hma1.2p1_0229F.1_g096710 Hma1.2p1_0229F.1 + View
Lupinus albus Lalb_Chr04g0253681 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Lalb_Chr04 + View
Lupinus albus Lalb_Chr11g0074161 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Lalb_Chr11 - View
Lupinus albus Lalb_Chr08g0232671 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Lalb_Chr08 + View
Lotus japonicus Lj3g0018911 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) chr3 + View
Lotus japonicus Lj6g0005211 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) chr6 - View
Lactuca sativa Lsat_1_v5_gn_1_37901 Lsat_1_v8_lg_1 + View
Magnolia biondii MBI19_g05293_MAGBIO AED:0.04 Chr19 + View
Malus domestica MD09G1179100 Small nuclear ribonucleoprotein family protein Chr09 - View
Malus domestica MD17G1164700 Small nuclear ribonucleoprotein family protein Chr17 - View
Manihot esculenta Manes.11G017100 Chromosome11 - View
Manihot esculenta Manes.04G147400 Chromosome04 + View
Medicago truncatula Medtr8g021250 small nuclear ribonucleoprotein chr8 + View
Nelumbo nucifera Nn8g38590 chr8 - View
Nicotiana tabacum Nitab4.5_0002716g0030 Like-Sm (LSM) domain, Ribonucleoprotein LSM domain, eukaryotic/archaea-type, Ribonucleoprotein LSM domain Nitab4.5_0002716 + View
Olea europaea Oeu000393.1 chr17 - View
Petunia axillaris Peaxi162Scf00207g01428 Small nuclear ribonucleoprotein family protein Peaxi162Scf00207 + View
Petunia axillaris Peaxi162Scf00038g02026 Small nuclear ribonucleoprotein family protein Peaxi162Scf00038 - View
Punica granatum PGR102G2595 NC_045129.1 + View
Punica granatum PGR119G1472 NC_045132.1 + View
Prunus persica Prupe.3G038200 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Pp03 - View
Pisum sativum Psat4g167680 LSM domain chr4LG4 - View
Papaver somniferum PSO421G0525 NW_020619603.1 - View
Populus trichocarpa Potri.001G166600 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr01 - View
Populus trichocarpa Potri.003G068400 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr03 + View
Phaseolus vulgaris Phvul.010G127800 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) Chr10 - View
Quercus lobata QL05p003868 5 - View
Rosa chinensis RcHm_v2.0_Chr2g0146261 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim12G0211200 chr12 + View
Salvia bowleyana SalBow7G0983 GWHASIU00000005 + View
Salix brachista Sabra01G0126700 GWHAAZH00000001 + View
Simmondsia chinensis Sc08g0008960 GWHAASQ00000008 + View
Sechium edule Sed0006806 LG06 - View
Sechium edule Sed0026729 LG04 + View
Sechium edule Sed0000321 LG09 - View
Solanum lycopersicum Solyc06g062980.3 U6 snRNA-associated Sm-like protein LSm1 (AHRD V3.3 *** A0A2G3C8I8_CAPCH) SL4.0ch06 + View
Solanum lycopersicum Solyc03g122260.3 U6 snRNA-associated Sm-like protein LSm1 (AHRD V3.3 *** A0A1U8FUD8_CAPAN) SL4.0ch03 - View
Schrenkiella parvula Sp3g12340 K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1) ch3-1 + View
Solanum pennellii Sopen06g022430 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein Spenn-ch06 + View
Solanum pennellii Sopen03g041000 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG402022886 Lsm1 ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400004863 Lsm1 ST4.03ch06 - View
Trochodendron aralioides TAR636G1157 group1 + View
Trochodendron aralioides TAR626G1464 group3 - View
Theobroma cacao Thecc.06G123500 Small nuclear ribonucleoprotein family protein Chromosome_6 + View
Tarenaya hassleriana THA.LOC104822662 sm-like protein LSM1B NW_010966725.1 + View
Trifolium pratense TPR.G16754 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI63G0253 NC_052240.1 + View
Vaccinium macrocarpon vmacro15047 Similar to LSM1B: Sm-like protein LSM1B (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0908 CM024078.1 + View
Vitis vinifera GSVIVG01016726001 chr9 - View