Gene: Carub.0003s1369

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s1369
  • Transcript Identifier Carub.0003s1369.1
  • Gene Type Coding gene
  • Location scaffold_3 : 4780964-4782205 : positive

Gene Family Information

  • ID HOM05D003045
  • #Genes/#Species 226/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s1369.v1.1
  • pacid 39240719
  • synonym Carubv10014920m.g

Descriptions

  • Description K12620 - U6 snRNA-associated Sm-like protein LSm1 (LSM1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process
GO:0042538
ISO
PLAZA Integrative Orthologyhyperosmotic salinity response AT3G14080
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT3G14080
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT3G14080
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT3G14080
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G14080

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G14080
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT3G14080

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT3G14080

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034104 Sm-like protein Lsm1
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
Mapman id Description
16.2.3.1 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm1