Gene: Sopen06g022430

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g022430
  • Transcript Identifier Sopen06g022430.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 50011795-50014071 : positive

Gene Family Information

  • ID HOM05D003045
  • #Genes/#Species 226/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g022430.1

Descriptions

  • Description Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process
GO:0042538
ISO
PLAZA Integrative Orthologyhyperosmotic salinity response AT1G19120
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT1G19120
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT1G19120
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G19120
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT1G19120

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G19120
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G19120

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT1G19120

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034104 Sm-like protein Lsm1
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
Mapman id Description
16.2.3.1 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm1