Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold153G36969 scaffold153 + View
SGA_v2.0_scaffold11G05535 scaffold11 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G14880 LG-10 + View
Acer truncatum Atru.chr5.251 chr5 + View
Actinidia chinensis Actinidia18725 Lachesis_group8 + View
Actinidia chinensis Actinidia14436 Lachesis_group6 - View
Actinidia chinensis Actinidia33478 Lachesis_group16 - View
Arabidopsis lyrata AL6G53330 scaffold_6 + View
Arabidopsis lyrata AL4G44250 scaffold_4 + View
Arabidopsis lyrata AL5G42910 scaffold_5 + View
Avicennia marina MSTRG.28179 ScioBoG_94932_HRSCAF_95134 - View
Avicennia marina MSTRG.17160 ScioBoG_19743_HRSCAF_19834 + View
Avicennia marina MSTRG.4911 ScioBoG_102838_HRSCAF_103081 - View
Aquilegia oxysepala Aqoxy7G00733 CHR07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2BC2K1 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED arahy.Tifrunner.gnm1.Arahy.12 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.LRKT77 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED arahy.Tifrunner.gnm1.Arahy.02 + View
Arabidopsis thaliana AT3G60600 vesicle associated protein Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. vesicle associated protein (VAP)%3B FUNCTIONS IN: protein binding%3B INVOLVED IN: intracellular transport%3B LOCATED IN: in 7 components%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%2C Vesicle-associated membrane protein (InterPro:IPR016763)%3B BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 (TAIR:AT2G45140.1)%3B Has 1108 Blast hits to 1074 proteins in 204 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 446%3B Fungi - 141%3B Plants - 434%3B Viruses - 0%3B Other Eukaryotes - 87 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT2G45140 plant VAP homolog 12 Encodes a Plant VAMP-Associated protein that localizes to the ER and binds to the sitosterol-binding protein ORP3a. The WFDE motif in ORP3a appears to be important for this direct interaction. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. plant VAP homolog 12 (PVA12)%3B FUNCTIONS IN: structural molecule activity%3B LOCATED IN: cytosol%2C endoplasmic reticulum%2C nucleus%2C plasma membrane%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%2C Vesicle-associated membrane protein (InterPro:IPR016763)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1106 Blast hits to 1079 proteins in 208 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 441%3B Fungi - 140%3B Plants - 434%3B Viruses - 0%3B Other Eukaryotes - 91 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT4G00170 Plant VAMP (vesicle-associated membrane protein) family protein Plant VAMP (vesicle-associated membrane protein) family protein%3B FUNCTIONS IN: structural molecule activity%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962)%2C Major sperm protein (InterPro:IPR000535)%2C Vesicle-associated membrane protein (InterPro:IPR016763)%3B BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1)%3B Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 430%3B Fungi - 141%3B Plants - 437%3B Viruses - 0%3B Other Eukaryotes - 92 (source: NCBI BLink). Chr4 - View
Brassica carinata BcaB01g03289 ChrB01 - View
Brassica carinata BcaC02g10163 ChrC02 + View
Brassica carinata BcaC01g05156 ChrC01 - View
Brassica carinata BcaB02g07403 ChrB02 - View
Brassica napus A04p33650 A04 + View
Brassica napus A09p52820 A09 + View
Brassica napus C04p32060 C04 - View
Brassica napus C08p35560 C08 + View
Brassica napus A03p25040 A03 + View
Brassica napus C03p29880 C03 + View
Brassica napus A04p01550 A04 - View
Brassica napus C04p71410 C04 + View
Brassica oleracea BolC4t28648H C4 + View
Brassica oleracea BolC4t24759H C4 - View
Brassica oleracea BolC3t15335H C3 + View
Brassica rapa BraA09t40714Z A09 + View
Brassica rapa BraA04t15876Z A04 - View
Brassica rapa BraA04t18829Z A04 + View
Beta vulgaris EL10Ac1g00839 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr1_EL10_PGA_scaffold3 + View
Camellia sinensis var. sinensis CSS0013442 Plant VAP [Theobroma cacao] Chr3 + View
Coffea canephora Cc02_g24350 Vesicle-associated protein 1-3 chr2 - View
Carpinus fangiana Cfa011167 Cfa04 + View
Cardamine hirsuta CARHR170980 Vesicle-associated membrane protein, putative Chr5 + View
Cardamine hirsuta CARHR140370 Vesicle-associated membrane protein, putative Chr4 + View
Carya illinoinensis CiPaw.14G025700 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr14 + View
Carya illinoinensis CiPaw.13G032500 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr13 + View
Chenopodium quinoa AUR62004166 PVA12: Vesicle-associated protein 1-2 C_Quinoa_Scaffold_4250 + View
Capsella rubella Carub.0004s2775 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_4 + View
Capsella rubella Carub.0005s2734 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_5 + View
Daucus carota DCAR_006828 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv44118 GWHABJS00000020 + View
Davidia involucrata Dinv43673 GWHABJS00000016 + View
Durio zibethinus Duzib138G0606 NW_019167893.1 + View
Durio zibethinus Duzib133G1495 NW_019167938.1 + View
Durio zibethinus Duzib084G0542 NW_019167827.1 + View
Erigeron canadensis ECA236G2723 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA240G4631 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.D02475 Chr04 + View
Erythranthe guttata Migut.N01614 scaffold_14 - View
Erythranthe guttata Migut.B01595 scaffold_2 + View
Eutrema salsugineum Thhalv10001649m.g PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_22 + View
Eutrema salsugineum Thhalv10006213m.g PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED scaffold_19 - View
Fragaria x ananassa FAN10G1856 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7-1 + View
Fragaria x ananassa FAN06G4991 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7-2 + View
Fragaria x ananassa FAN10G3823 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7-1 + View
Fragaria x ananassa FAN06G4164 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7-2 + View
Fragaria x ananassa FAN01G2905 PTHR10809:SF43 - VESICLE-ASSOCIATED PROTEIN 1-3 Fvb7-4 + View
Fragaria vesca FvH4_7g11090 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Fvb7 + View
Gossypium hirsutum Gohir.A11G078800 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED A11 + View
Gossypium hirsutum Gohir.D08G157500 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED D08 - View
Gossypium hirsutum Gohir.D08G041100 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED D08 + View
Gossypium hirsutum Gohir.A08G030200 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED A08 + View
Gossypium hirsutum Gohir.D11G083400 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED D11 + View
Glycine max Glyma.01G136000 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Gm01 + View
Glycine max Glyma.03G032100 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Gm03 - View
Gossypium raimondii Gorai.004G040100 Chr04 + View
Gossypium raimondii Gorai.007G089000 Chr07 + View
Gossypium raimondii Gorai.004G163800 Chr04 - View
Helianthus annuus HanXRQChr13g0423081 Putative major sperm protein (MSP) domain; Vesicle-associated membrane-protein-associated protein HanXRQChr13 + View
Lupinus albus Lalb_Chr07g0190231 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Lalb_Chr07 - View
Lotus japonicus Lj2g0025727 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED chr2 - View
Lonicera japonica Lj7A534T34 GWHAAZE00000007 + View
Lonicera japonica Lj9A565T42 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_7_9220 Lsat_1_v8_lg_7 + View
Malus domestica MD02G1209600 Plant VAMP (vesicle-associated membrane protein) family protein Chr02 + View
Malus domestica MD07G1115600 plant VAP homolog 12 Chr07 + View
Manihot esculenta Manes.01G268500 Chromosome01 + View
Medicago truncatula Medtr4g026540 MSP (major sperm protein) domain protein chr4 - View
Nicotiana tabacum Nitab4.5_0000859g0220 MSP domain, PapD-like Nitab4.5_0000859 + View
Petunia axillaris Peaxi162Scf00102g01144 vesicle associated protein Peaxi162Scf00102 + View
Prunus persica Prupe.2G138100 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Pp02 + View
Populus trichocarpa Potri.002G144000 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr02 + View
Populus trichocarpa Potri.014G060900 PTHR10809//PTHR10809:SF50 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr14 - View
Phaseolus vulgaris Phvul.010G072400 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED Chr10 - View
Quercus lobata QL04p038709 4 + View
Rosa chinensis RcHm_v2.0_Chr1g0349111 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim07G0031200 chr07 - View
Salvia bowleyana SalBow5G4897 GWHASIU00000003 + View
Salix brachista Sabra02G0112700 GWHAAZH00000002 - View
Solanum lycopersicum Solyc01g090910.3 Vesicle-associated protein 1-1 (AHRD V3.3 *** A0A1J3D959_NOCCA) SL4.0ch01 + View
Schrenkiella parvula Sp4g27200 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED ch4-6 + View
Schrenkiella parvula Sp5g02630 PTHR10809:SF50 - VESICLE-ASSOCIATED PROTEIN 1-1-RELATED ch5-1 - View
Solanum pennellii Sopen01g036650 Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. | VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1 (VAP27-1) | FUNCTIONS IN: protein binding | INVOLVED IN: intracellular transport | LOCATED IN: in 7 components | EXPRESSED IN: 27 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: PapD-like , Major sperm protein , Vesicle-associated membrane protein | BEST Arabidopsis thaliana protein match is: plant VAP homolog 12 Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400026015 VAP27 ST4.03ch01 + View
Selenicereus undatus Hund17043 Scaffold_33675 + View
Trochodendron aralioides TAR629G3241 group0 - View
Tarenaya hassleriana THA.LOC104802469 vesicle-associated protein 1-2 NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104817219 vesicle-associated protein 1-2 NW_010965946.1 + View
Tripterygium wilfordii TWI23G0573 NC_052239.1 + View
Tripterygium wilfordii TWI59G0779 NC_052248.1 + View
Utricularia gibba unitig_26.g8889 unitig_26 + View
Vaccinium macrocarpon vmacro13443 Similar to PVA12: Vesicle-associated protein 1-2 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro21030 Similar to PVA12: Vesicle-associated protein 1-2 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View