Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G6590 LG-2 - View
Actinidia chinensis Actinidia16620 Lachesis_group4 - View
Actinidia chinensis Actinidia38388 Lachesis_group15 + View
Arabidopsis lyrata AL2G27810 scaffold_2 + View
Arabidopsis lyrata AL1G39740 scaffold_1 + View
Arabidopsis lyrata AL5G14290 scaffold_5 + View
Avicennia marina MSTRG.818 ScioBoG_102831_HRSCAF_103044 + View
Avicennia marina MSTRG.7684 ScioBoG_102841_HRSCAF_103114 - View
Avicennia marina MSTRG.2259 ScioBoG_102834_HRSCAF_103055 - View
Avicennia marina MSTRG.13506 ScioBoG_18778_HRSCAF_18863 + View
Amaranthus hybridus Ah.03g137890 AmaHy_arrow1_Scaffold_3 - View
Arabidopsis thaliana AT1G25560 AP2/B3 transcription factor family protein Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn%2C binds to promoter elements in ethylene responsive genes. TEMPRANILLO 1 (TEM1)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: photoperiodism%2C flowering%2C ethylene mediated signaling pathway%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: related to ABI3/VP1 2 (TAIR:AT1G68840.2)%3B Has 6413 Blast hits to 6197 proteins in 270 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6380%3B Viruses - 0%3B Other Eukaryotes - 30 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G68840 related to ABI3/VP1 2 Rav2 is part of a complex that has been named %60regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) related to ABI3/VP1 2 (RAV2)%3B FUNCTIONS IN: transcription repressor activity%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 12 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: AP2/B3 transcription factor family protein (TAIR:AT1G25560.1)%3B Has 6747 Blast hits to 6417 proteins in 277 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6717%3B Viruses - 0%3B Other Eukaryotes - 27 (source: NCBI BLink). related to ABI3/VP1 2 (RAV2)%3B FUNCTIONS IN: transcription repressor activity%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 8 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: AP2/B3 transcription factor family protein (TAIR:AT1G25560.1). Chr1 + View
Arabidopsis thaliana AT1G13260 related to ABI3/VP1 1 Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. related to ABI3/VP1 1 (RAV1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Transcriptional factor B3 (InterPro:IPR003340)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1)%3B Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0%3B Bacteria - 3%3B Metazoa - 0%3B Fungi - 0%3B Plants - 6251%3B Viruses - 0%3B Other Eukaryotes - 23 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC03g17289 ChrC03 + View
Brassica carinata BcaC05g26652 ChrC05 + View
Brassica carinata BcaB07g30255 ChrB07 - View
Brassica carinata BcaC06g31121 ChrC06 - View
Brassica carinata BcaC05g26439 ChrC05 + View
Brassica carinata BcaB05g24418 ChrB05 + View
Brassica carinata BcaC06g33961 ChrC06 - View
Brassica napus A02p34080 A02 + View
Brassica napus A02p15390 A02 + View
Brassica napus C05p24890 C05 + View
Brassica napus C03p72830 C03 + View
Brassica napus C07p34610 C07 + View
Brassica oleracea BolC3t19581H C3 + View
Brassica rapa BraA02t06600Z A02 + View
Brassica rapa BraA08t34652Z A08 - View
Camellia sinensis var. sinensis CSS0022168 RAV transcription factor [Camellia sinensis] Chr10 + View
Corylus avellana Haze_17445 Similar to TEM1: AP2/ERF and B3 domain-containing transcription repressor TEM1 (Arabidopsis thaliana OX%3D3702) 7 + View
Citrus clementina Ciclev10031846m.g scaffold_4 - View
Cardamine hirsuta CARHR146650 Transcription factor, putative Chr5 + View
Cardamine hirsuta CARHR025890 Transcription factor, putative Chr1 + View
Cardamine hirsuta CARHR013640 Transcription factor, putative Chr1 + View
Cardamine hirsuta CARHR061680 Transcription factor, putative Chr2 + View
Capsella rubella Carub.0001s1299 K09287 - RAV-like factor (RAV) scaffold_1 + View
Capsella rubella Carub.0001s2492 K09287 - RAV-like factor (RAV) scaffold_1 + View
Capsella rubella Carub.0002s1543 K09287 - RAV-like factor (RAV) scaffold_2 + View
Daucus carota DCAR_030078 hypothetical protein DCARv2_Chr9 - View
Daucus carota DCAR_023683 hypothetical protein DCARv2_Chr7 - View
Daucus carota DCAR_026717 hypothetical protein DCARv2_Chr8 - View
Daucus carota DCAR_007228 hypothetical protein DCARv2_Chr2 + View
Eucalyptus grandis Eucgr.B03048 Chr02 - View
Erythranthe guttata Migut.L01094 scaffold_12 - View
Eutrema salsugineum Thhalv10007983m.g PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10010019m.g PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10004508m.g PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED scaffold_6 - View
Eutrema salsugineum Thhalv10019566m.g PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED scaffold_9 - View
Fragaria x ananassa FAN07G0290 PTHR31140//PTHR31140:SF3 - FAMILY NOT NAMED // AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED Fvb4-4 + View
Gossypium hirsutum Gohir.A13G053300 PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED A13 + View
Gossypium hirsutum Gohir.A12G170100 PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED A12 - View
Gossypium raimondii Gorai.008G185900 Chr08 - View
Lupinus albus Lalb_Chr17g0341901 K09287 - RAV-like factor (RAV) Lalb_Chr17 + View
Lupinus albus Lalb_Chr04g0254901 K09287 - RAV-like factor (RAV) Lalb_Chr04 - View
Lonicera japonica Lj6P764T48 GWHAAZE00000006 - View
Malus domestica MD16G1047700 AP2/B3 transcription factor family protein Chr16 - View
Manihot esculenta Manes.14G098000 Chromosome14 + View
Manihot esculenta Manes.06G071700 Chromosome06 - View
Punica granatum PGR119G0462 NC_045132.1 - View
Punica granatum PGR102G0883 NC_045129.1 + View
Populus trichocarpa Potri.008G117100 PTHR31140:SF3 - AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR RAV2-RELATED Chr08 + View
Phaseolus vulgaris Phvul.003G111800 K09287 - RAV-like factor (RAV) Chr03 + View
Rhododendron simsii Rhsim12G0144600 chr12 - View
Simmondsia chinensis Sc11g0003130 GWHAASQ00000011 + View
Sechium edule Sed0001515 LG03 - View
Sechium edule Sed0026901 LG06 + View
Solanum lycopersicum Solyc04g007000.2 AP2/B3 transcription factor family protein (AHRD V3.3 *** A0A2U1MEM3_ARTAN) SL4.0ch04 + View
Schrenkiella parvula Sp2g14980 K09287 - RAV-like factor (RAV) ch2-4 + View
Schrenkiella parvula Sp1g22650 K09287 - RAV-like factor (RAV) ch1-1 + View
Schrenkiella parvula Sp5g23950 K09287 - RAV-like factor (RAV) ch5-6 + View
Solanum pennellii Sopen04g002090 Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. | related to ABI3/VP1 1 (RAV1) | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Transcriptional factor B3 , Pathogenesis-related transcriptional factor/ERF, DNA-binding | BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 Spenn-ch04 + View
Solanum tuberosum PGSC0003DMG400007458 RAV ST4.03ch04 + View
Trochodendron aralioides TAR374G0875 group12 + View
Tarenaya hassleriana THA.LOC104821961 AP2/ERF and B3 domain-containing transcription repressor RAV2-like NW_010966617.1 - View
Tarenaya hassleriana THA.LOC104805246 AP2/ERF and B3 domain-containing transcription factor RAV1-like NW_010961290.1 + View
Tripterygium wilfordii TWI31G0981 NC_052233.1 - View
Tripterygium wilfordii TWI79G1296 NC_052238.1 - View
Vaccinium macrocarpon vmacro10531 Similar to RAV1: AP2/ERF and B3 domain-containing transcription factor RAV1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 + View