Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold94G28618 scaffold94 + View
SGA_v2.0_scaffold126G33823 scaffold126 + View
SGA_v2.0_scaffold75G24927 scaffold75 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G7490 LG-5 + View
Acer truncatum Atru.chr8.1932 chr8 - View
Acer truncatum Atru.chr3.3832 chr3 - View
Actinidia chinensis Actinidia13125 Lachesis_group0 + View
Actinidia chinensis Actinidia05296 Lachesis_group20 - View
Actinidia chinensis Actinidia03784 Lachesis_group9 - View
Actinidia chinensis Actinidia33856 Lachesis_group15 + View
Arabidopsis lyrata AL8G36430 scaffold_8 - View
Arabidopsis lyrata AL6G11830 scaffold_6 + View
Avicennia marina MSTRG.19102 ScioBoG_25048_HRSCAF_25167 + View
Avicennia marina MSTRG.10271 ScioBoG_13798_HRSCAF_13862 + View
Avicennia marina MSTRG.5686 ScioBoG_102839_HRSCAF_103093 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QHU61X K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SJW8XV K11251 - histone H2A (H2A) arahy.Tifrunner.gnm1.Arahy.18 + View
Arabidopsis thaliana AT5G59870 histone H2A 6 Encodes HTA6%2C a histone H2A protein. histone H2A 6 (HTA6)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleolus%3B EXPRESSED IN: 27 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: histone H2A 12 (TAIR:AT5G02560.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT5G02560 histone H2A 12 Encodes HTA12%2C a histone H2A protein. histone H2A 12 (HTA12)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119)%2C Histone-fold (InterPro:IPR009072)%2C Histone core (InterPro:IPR007125)%3B BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1)%3B Has 3926 Blast hits to 3921 proteins in 369 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2576%3B Fungi - 297%3B Plants - 619%3B Viruses - 2%3B Other Eukaryotes - 432 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaC03g13054 ChrC03 - View
Brassica napus C02p00530 C02 + View
Brassica oleracea BolC2t07303H C2 + View
Brassica rapa BraA02t05755Z A02 + View
Brassica rapa BraA02t04722Z A02 + View
Brassica rapa BraA10t43793Z A10 - View
Camellia sinensis var. sinensis CSS0031573 putative histone H2A.4 [Morus notabilis] Chr11 - View
Camellia sinensis var. sinensis CSS0011890 PREDICTED: histone H2A [Nelumbo nucifera] Chr4 + View
Camellia sinensis var. sinensis CSS0009707 histone H2A12, partial [Gossypium hirsutum] Chr4 - View
Camellia sinensis var. sinensis CSS0010616 putative histone H2A.4 [Morus notabilis] Chr10 + View
Cannabis sativa CANSAT56G1715 NC_044371.1 - View
Cicer arietinum L. Ca_01339_v3 Ca_LG1_v3 - View
Corylus avellana Haze_20741 Similar to MtrDRAFT_AC149210g1v1: Probable histone H2A.1 (Medicago truncatula OX%3D3880) 10 - View
Coffea canephora Cc06_g02980 Histone H2A chr6 + View
Coffea canephora Cc01_g12440 Histone H2A chr1 - View
Citrus clementina Ciclev10013023m.g scaffold_6 - View
Citrus clementina Ciclev10029498m.g scaffold_8 - View
Ceratophyllum demersum CDE07G0241 5 + View
Ceratophyllum demersum CDE04G1788 2 - View
Carpinus fangiana Cfa017430 Cfa07 + View
Cardamine hirsuta CARHR210800 Histone H2A Chr6 - View
Cardamine hirsuta CARHR273460 Histone H2A Chr8 - View
Carya illinoinensis CiPaw.13G098100 K11251 - histone H2A (H2A) Chr13 + View
Carya illinoinensis CiPaw.14G071400 KOG1756 - Histone 2A Chr14 + View
Carya illinoinensis CiPaw.10G143100 K11251 - histone H2A (H2A) Chr10 - View
Citrullus lanatus ClCG02G020390 Histone H2A CG_Chr02 + View
Citrullus lanatus ClCG04G008410 Histone H2A CG_Chr04 + View
Cucumis melo MELO3C013682.2 histone H2A chr11 - View
Cucumis melo MELO3C003108.2 Histone H2A chr08 - View
Chenopodium quinoa AUR62001828 Os05g0113900: Probable histone H2A.6 C_Quinoa_Scaffold_2716 + View
Capsella rubella Carub.0006s0136 K11251 - histone H2A (H2A) scaffold_6 + View
Cucumis sativus L. CsaV3_4G024740 Histone H2A chr4 - View
Cucumis sativus L. CsaV3_6G022220 Histone H2A chr6 - View
Daucus carota DCAR_006000 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_018893 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv35637 GWHABJS00000015 + View
Davidia involucrata Dinv37206 GWHABJS00000021 - View
Durio zibethinus Duzib168G0962 NW_019168159.1 + View
Durio zibethinus Duzib106G0744 NW_019168492.1 - View
Durio zibethinus Duzib093G0191 NW_019167937.1 - View
Durio zibethinus Duzib170G0096 NW_019167871.1 + View
Durio zibethinus Duzib150G1462 NW_019167882.1 - View
Erigeron canadensis ECA238G2456 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.A01241 Chr01 + View
Eucalyptus grandis Eucgr.K03160 Chr11 + View
Erythranthe guttata Migut.L01618 scaffold_12 + View
Erythranthe guttata Migut.J00363 scaffold_10 + View
Eutrema salsugineum Thhalv10014920m.g K11251 - histone H2A (H2A) scaffold_2 + View
Eutrema salsugineum Thhalv10014932m.g K11251 - histone H2A (H2A) scaffold_2 + View
Fragaria x ananassa FAN09G4397 K11251 - histone H2A (H2A) Fvb6-2 - View
Fragaria x ananassa FAN14G2934 KOG1756 - Histone 2A Fvb6-1 - View
Fragaria x ananassa FAN02G1491 K11251 - histone H2A (H2A) Fvb6-4 + View
Fragaria x ananassa FAN05G1977 K11251 - histone H2A (H2A) Fvb6-3 - View
Fragaria vesca FvH4_6g14320 K11251 - histone H2A (H2A) Fvb6 + View
Gossypium hirsutum Gohir.D08G010700 K11251 - histone H2A (H2A) D08 - View
Gossypium hirsutum Gohir.A01G219700 KOG1756 - Histone 2A A01 - View
Gossypium hirsutum Gohir.A08G000169 K11251 - histone H2A (H2A) A08 - View
Gossypium hirsutum Gohir.D01G208800 K11251 - histone H2A (H2A) D01 - View
Glycine max Glyma.13G333800 K11251 - histone H2A (H2A) Gm13 - View
Glycine max Glyma.15G040200 K11251 - histone H2A (H2A) Gm15 - View
Gossypium raimondii Gorai.004G004000 Chr04 - View
Gossypium raimondii Gorai.002G254000 Chr02 - View
Hydrangea macrophylla Hma1.2p1_0035F.1_g022140 Hma1.2p1_0035F.1 + View
Hydrangea macrophylla Hma1.2p1_0350F.1_g132390 Hma1.2p1_0350F.1 + View
Lupinus albus Lalb_Chr19g0137721 K11251 - histone H2A (H2A) Lalb_Chr19 - View
Lupinus albus Lalb_Chr01g0003771 K11251 - histone H2A (H2A) Lalb_Chr01 + View
Lotus japonicus Lj3g0000114 PTHR23430//PTHR23430:SF96 - HISTONE H2A // SUBFAMILY NOT NAMED chr3 - View
Lonicera japonica Lj2C100T3 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_6_32381 K11251 - histone H2A (H2A) Lsat_1_v8_lg_6 + View
Lactuca sativa Lsat_1_v5_gn_2_110521 K11251 - histone H2A (H2A) Lsat_1_v8_lg_2 + View
Malus domestica MD04G1121000 histone H2A 12 Chr04 - View
Malus domestica MD12G1138300 histone H2A 12 Chr12 - View
Manihot esculenta Manes.04G031600 Chromosome04 - View
Manihot esculenta Manes.11G133400 Chromosome11 + View
Medicago truncatula Medtr2g096570 core histone H2A/H2B/H3/H4 chr2 - View
Olea europaea Oeu036178.1 scaffold309 + View
Oryza sativa ssp. japonica Os05g0113900 Similar to Histone H2A. chr05 + View
Petunia axillaris Peaxi162Scf00039g01221 histone H2A 12 Peaxi162Scf00039 + View
Punica granatum PGR119G2120 NC_045132.1 + View
Punica granatum PGR004G1733 NC_045131.1 - View
Prunus persica Prupe.6G250200 Pp06 - View
Phaseolus vulgaris Phvul.L003343 K11251 - histone H2A (H2A) scaffold_15 - View
Quercus lobata QL07p047320 7 - View
Rosa chinensis RcHm_v2.0_Chr3g0467311 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim05G0188100 chr05 - View
Rhododendron simsii Rhsim13G0086000 chr13 + View
Salvia bowleyana SalBow3G3843 GWHASIU00000006 + View
Salvia bowleyana SalBow4G0751 GWHASIU00000008 - View
Salvia bowleyana SalBow3G4403 GWHASIU00000006 - View
Simmondsia chinensis Sc20g0004580 GWHAASQ00000020 - View
Simmondsia chinensis Sc01g0003980 GWHAASQ00000001 - View
Sechium edule Sed0023753 LG05 - View
Sechium edule Sed0008788 LG14 - View
Solanum lycopersicum Solyc09g010400.3 Histone H2A (AHRD V3.3 *** A0A2G2VY95_CAPBA) SL4.0ch09 + View
Schrenkiella parvula Sp6g21570 K11251 - histone H2A (H2A) ch6-6 - View
Solanum pennellii Sopen09g005140 Probable histone H2A.1 - Medicago truncatula (Barrel medic), Encodes HTA12, a histone H2A protein. | histone H2A 12 (HTA12) | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus, nucleosome | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: histone H2A 6 ., Histone-fold Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400008930 Histone H2A ST4.03ch09 - View
Selenicereus undatus Hund18931 Scaffold_33675 + View
Trochodendron aralioides TAR623G0034 group7 - View
Trochodendron aralioides TAR623G0039 group7 - View
Trochodendron aralioides TAR633G0820 group2 - View
Theobroma cacao Thecc.05G044600 Histone H2A 12 Chromosome_5 + View
Tarenaya hassleriana THA.LOC104827005 histone H2A NW_010967707.1 - View
Tripterygium wilfordii TWI75G1033 NC_052253.1 + View
Tripterygium wilfordii TWI79G0502 NC_052238.1 + View
Tripterygium wilfordii TWI31G0543 NC_052233.1 + View
Utricularia gibba unitig_749.g14255 unitig_749 + View
Vaccinium macrocarpon vmacro20127 Similar to Histone H2A (Petroselinum crispum OX%3D4043) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro08672 Similar to At5g02560: Probable histone H2A.4 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro03103 Similar to Histone H2A (Petroselinum crispum OX%3D4043) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Zea mays Zm00001eb397500 Zm00001e038465 Histone H2A 9 + View