Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G2100 LG-6 + View
Arabidopsis lyrata AL7G34630 scaffold_7 - View
Arabidopsis thaliana AT4G19490 VPS54 Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system. VPS54%3B INVOLVED IN: retrograde transport%2C endosome to Golgi%3B LOCATED IN: chloroplast%3B EXPRESSED IN: male gametophyte%3B EXPRESSED DURING: L mature pollen stage%3B CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515)%2C Vps54-like (InterPro:IPR012501)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). VPS54%3B INVOLVED IN: retrograde transport%2C endosome to Golgi%3B LOCATED IN: chloroplast%3B EXPRESSED IN: male gametophyte%3B EXPRESSED DURING: L mature pollen stage%3B CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515)%2C Vps54-like (InterPro:IPR012501)%3B Has 471 Blast hits to 377 proteins in 168 species: Archae - 2%3B Bacteria - 4%3B Metazoa - 149%3B Fungi - 188%3B Plants - 45%3B Viruses - 0%3B Other Eukaryotes - 83 (source: NCBI BLink). Chr4 + View
Brassica napus A01p11430 A01 + View
Brassica oleracea BolC1t01321H C1 + View
Brassica rapa BraA01t01089Z A01 + View
Carpinus fangiana Cfa000748 Cfa01 + View
Cardamine hirsuta CARHR226290 Vacuolar protein sorting, putative Chr7 + View
Capsella rubella Carub.0007s2172 K17600 - vacuolar protein sorting-associated protein 54 (VPS54) scaffold_7 - View
Erythranthe guttata Migut.H01305 scaffold_8 - View
Salvia bowleyana SalBow7G3129 GWHASIU00000005 - View
Schrenkiella parvula Sp7g18100 K17600 - vacuolar protein sorting-associated protein 54 (VPS54) ch7-4 + View
Solanum pennellii Sopen02g018780 Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system. | VPS54 | INVOLVED IN: retrograde transport, endosome to Golgi | LOCATED IN: chloroplast | EXPRESSED IN: male gametophyte | EXPRESSED DURING: L mature pollen stage | CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 , Vps54-like Spenn-ch02 - View