Gene: AT4G19490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G19490
  • Transcript Identifier AT4G19490.2
  • Gene Type Coding gene
  • Location Chr4 : 10616017-10622934 : positive

Gene Family Information

  • ID HOM05D003481
  • #Genes/#Species 196/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G19490.2
  • uniprot F4JT76

Descriptions

  • Description VPS54
  • Computational description VPS54; INVOLVED IN: retrograde transport, endosome to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515), Vps54-like (InterPro:IPR012501); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description VPS54; INVOLVED IN: retrograde transport, endosome to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515), Vps54-like (InterPro:IPR012501); Has 471 Blast hits to 377 proteins in 168 species: Archae - 2; Bacteria - 4; Metazoa - 149; Fungi - 188; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042147
IEA
GOA Databaseretrograde transport, endosome to Golgi
GO:0042147
IBA
Gene Ontologyretrograde transport, endosome to Golgi1
GO:0042147
IEA
InterProretrograde transport, endosome to Golgi
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006896
IBA
Gene OntologyGolgi to vacuole transport1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019905
IBA
Gene Ontologysyntaxin binding1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0000938
IEA
GOA DatabaseGARP complex
GO:0000938
IDA
IBA
Gene OntologyGARP complex1 2
GO:0000938
IEA
InterProGARP complex
GO:0016020
IEA
GOA Databasemembrane
GO:0009536
IEA
GOA Databaseplastid
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0000139
IDA
Gene OntologyGolgi membrane2
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
ISM
Gene OntologyGolgi apparatus
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
RCA
Gene Ontologycytosol3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039745 Vacuolar protein sorting-associated protein 54
IPR012501 Vacuolar protein sorting-associated protein 54, C-terminal
Mapman id Description
22.3.4.8.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.GARP-specific component VPS54