Gene: Sopen02g018780
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g018780
- Transcript Identifier Sopen02g018780.2
- Gene Type Coding gene
- Location Spenn-ch02 : 42750488-42774706 : negative
Gene Family Information
- ID HOM05D003481
- #Genes/#Species 196/95
- Phylogenetic origin
- ID ORTHO05D004001
- #Genes/#Species 195/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen02g018780.2
Descriptions
- Description Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system. | VPS54 | INVOLVED IN: retrograde transport, endosome to Golgi | LOCATED IN: chloroplast | EXPRESSED IN: male gametophyte | EXPRESSED DURING: L mature pollen stage | CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 , Vps54-like
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042147 | IEA | InterPro | retrograde transport, endosome to Golgi |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G19490 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000938 | IEA | InterPro | GARP complex | |
| GO:0000139 | ISO | PLAZA Integrative Orthology | Golgi membrane | AT4G19490 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 22.3.4.8.4 | Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.GARP-specific component VPS54 |