Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold162G37920 scaffold162 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G13150 LG-6 - View
Acer truncatum Atru.chr13.368 chr13 + View
Actinidia chinensis Actinidia15382 Lachesis_group26 + View
Actinidia chinensis Actinidia29800 Lachesis_group27 + View
Actinidia chinensis Actinidia22499 Lachesis_group28 + View
Actinidia chinensis Actinidia37982 Lachesis_group7 + View
Avicennia marina MSTRG.25212 ScioBoG_4119_HRSCAF_4138 - View
Avicennia marina MSTRG.1233 ScioBoG_102833_HRSCAF_103052 + View
Avicennia marina MSTRG.24269 ScioBoG_4088_HRSCAF_4107 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Y15ID5 PF05142 - Domain of unknown function (DUF702) (DUF702) arahy.Tifrunner.gnm1.Arahy.13 - View
Arabidopsis thaliana AT1G19790 SHI-related sequence 7 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence%2C many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium%2C stamen and leaf development in Arabidopsis. SHI-related sequence 7 (SRS7)%3B CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1%2C C-terminal (InterPro:IPR006511)%2C Zinc finger%2C Lateral Root Primordium type 1 (InterPro:IPR006510)%2C Protein of unknown function DUF702 (InterPro:IPR007818)%3B BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1)%3B Has 184 Blast hits to 184 proteins in 22 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 8%3B Plants - 174%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). SHI-related sequence 7 (SRS7)%3B CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1%2C C-terminal (InterPro:IPR006511)%2C Zinc finger%2C Lateral Root Primordium type 1 (InterPro:IPR006510)%2C Protein of unknown function DUF702 (InterPro:IPR007818)%3B BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G75520 SHI-related sequence 5 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence%2C many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium%2C stamen and leaf development in Arabidopsis. SHI-related sequence 5 (SRS5)%3B CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1%2C C-terminal (InterPro:IPR006511)%2C Zinc finger%2C Lateral Root Primordium type 1 (InterPro:IPR006510)%2C Protein of unknown function DUF702 (InterPro:IPR007818)%3B BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2)%3B Has 299 Blast hits to 299 proteins in 34 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 11%3B Fungi - 2%3B Plants - 180%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaB02g07027 ChrB02 - View
Brassica carinata BcaB07g31993 ChrB07 - View
Brassica napus A02p19990 A02 - View
Brassica napus A06p15910 A06 - View
Brassica napus C05p18220 C05 - View
Brassica napus A07p41060 A07 - View
Brassica napus C02p32690 C02 - View
Brassica oleracea BolC2t09300H C2 - View
Brassica oleracea BolC5t30529H C5 - View
Brassica rapa BraA06t24702Z A06 - View
Brassica rapa BraA07t31643Z A07 - View
Beta vulgaris EL10Ac1g00566 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED Chr1_EL10_PGA_scaffold3 + View
Camellia sinensis var. sinensis CSS0018010 hypothetical protein F383_16691 [Gossypium arboreum] Chr9 + View
Camellia sinensis var. sinensis CSS0017906 PREDICTED: protein SHI RELATED SEQUENCE 5-like [Sesamum indicum] Chr4 + View
Capsicum annuum CAN.G851.21 PGAv.1.6.scaffold851 + View
Capsicum annuum CAN.G170.82 PGAv.1.6.scaffold170 - View
Cicer arietinum L. Ca_02064_v3 Ca_LG1_v3 + View
Corylus avellana Haze_22577 Similar to SRS7: Protein SHI RELATED SEQUENCE 7 (Arabidopsis thaliana OX%3D3702) 3 - View
Coffea canephora Cc10_g02200 Putative SHI-related sequence 5 chr10 + View
Citrus clementina Ciclev10001824m.g scaffold_5 - View
Carpinus fangiana Cfa013898 Cfa05 - View
Cardamine hirsuta CARHR244660 Lateral root primordium (LRP) protein-related Chr7 - View
Cardamine hirsuta CARHR068920 SHI-related sequence 5 Chr2 - View
Carya illinoinensis CiPaw.08G062200 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr08 - View
Carya illinoinensis CiPaw.05G071500 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr05 - View
Carya illinoinensis CiPaw.07G154800 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr07 + View
Citrullus lanatus ClCG05G018620 Lateral root primordium family protein CG_Chr05 + View
Citrullus lanatus ClCG08G014580 Lateral root primordium family protein CG_Chr08 + View
Cucumis melo MELO3C010984.2 Protein SHI RELATED SEQUENCE 1 chr03 + View
Chenopodium quinoa AUR62014445 SHI: Protein SHORT INTERNODES C_Quinoa_Scaffold_1566 + View
Chenopodium quinoa AUR62034552 SHI: Protein SHORT INTERNODES C_Quinoa_Scaffold_1522 - View
Capsella rubella Carub.0007s0398 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED scaffold_7 + View
Capsella rubella Carub.0002s2238 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED scaffold_2 - View
Capsella rubella Carub.0001s1932 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED scaffold_1 - View
Cucumis sativus L. CsaV3_2G029220 protein SHI RELATED SEQUENCE 1 chr2 - View
Davidia involucrata Dinv39479 GWHABJS00000011 - View
Davidia involucrata Dinv42019 GWHABJS00000002 - View
Davidia involucrata Dinv31805 GWHABJS00000002 - View
Durio zibethinus Duzib248G0091 NW_019168048.1 - View
Durio zibethinus Duzib116G0506 NW_019167949.1 + View
Durio zibethinus Duzib041G0759 NW_019167826.1 + View
Durio zibethinus Duzib093G0081 NW_019167937.1 - View
Erigeron canadensis ECA246G2950 Conyza_canadensis_scaffold:8 - View
Erigeron canadensis ECA232G2385 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.F01614 Chr06 - View
Erythranthe guttata Migut.N03122 scaffold_14 - View
Eutrema salsugineum Thhalv10009634m.g PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED scaffold_5 + View
Eutrema salsugineum Thhalv10025845m.g PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED scaffold_1 + View
Eutrema salsugineum Thhalv10019655m.g PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED scaffold_9 + View
Fragaria x ananassa FAN27G2239 PF05142 - Domain of unknown function (DUF702) (DUF702) Fvb2-1 + View
Fragaria vesca FvH4_2g38950 PF05142 - Domain of unknown function (DUF702) (DUF702) Fvb2 + View
Gossypium hirsutum Gohir.D05G192000 PF05142 - Domain of unknown function (DUF702) (DUF702) D05 + View
Gossypium hirsutum Gohir.D02G097000 PF05142 - Domain of unknown function (DUF702) (DUF702) D02 - View
Gossypium hirsutum Gohir.A03G080500 PF05142 - Domain of unknown function (DUF702) (DUF702) A03 - View
Gossypium hirsutum Gohir.D03G011400 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED D03 - View
Gossypium hirsutum Gohir.A05G188900 PF05142 - Domain of unknown function (DUF702) (DUF702) A05 + View
Gossypium hirsutum Gohir.A01G113350 PF05142 - Domain of unknown function (DUF702) (DUF702) A01 + View
Gossypium hirsutum Gohir.A02G168600 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED A02 + View
Glycine max Glyma.17G255000 PF05142 - Domain of unknown function (DUF702) (DUF702) Gm17 - View
Glycine max Glyma.04G027400 PF05142 - Domain of unknown function (DUF702) (DUF702) Gm04 + View
Glycine max Glyma.06G027500 PF05142 - Domain of unknown function (DUF702) (DUF702) Gm06 + View
Gossypium raimondii Gorai.009G197300 Chr09 + View
Gossypium raimondii Gorai.002G125600 Chr02 + View
Gossypium raimondii Gorai.003G011800 Chr03 - View
Gossypium raimondii Gorai.005G110600 Chr05 - View
Lupinus albus Lalb_Chr23g0266341 PF05142 - Domain of unknown function (DUF702) (DUF702) Lalb_Chr23 + View
Lupinus albus Lalb_Chr24g0398801 PF05142 - Domain of unknown function (DUF702) (DUF702) Lalb_Chr24 + View
Lupinus albus Lalb_Chr14g0369671 PF05142 - Domain of unknown function (DUF702) (DUF702) Lalb_Chr14 - View
Lonicera japonica Lj4C212T5 GWHAAZE00000004 - View
Lonicera japonica Lj4A30T28 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_1_16440 PTHR31604:SF3 - PROTEIN SHI RELATED SEQUENCE 1-RELATED Lsat_1_v8_lg_1 + View
Malus domestica MD15G1019200 SHI-related sequence 7 Chr15 - View
Malus domestica MD02G1137000 Lateral root primordium (LRP) protein-related Chr02 + View
Manihot esculenta Manes.11G087500 Chromosome11 - View
Medicago truncatula Medtr3g112510 transcription factor, putative chr3 - View
Olea europaea Oeu030401.1 chr14 + View
Punica granatum PGR031G1427 NC_045127.1 + View
Punica granatum PGR083G1590 NC_045133.1 + View
Prunus persica Prupe.1G371500 PF05142 - Domain of unknown function (DUF702) (DUF702) Pp01 - View
Populus trichocarpa Potri.005G234200 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr05 - View
Populus trichocarpa Potri.002G028500 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr02 + View
Phaseolus vulgaris Phvul.009G013700 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr09 - View
Phaseolus vulgaris Phvul.001G009800 PF05142 - Domain of unknown function (DUF702) (DUF702) Chr01 + View
Quercus lobata QL02p010571 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0302041 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim07G0244300 chr07 - View
Salvia bowleyana SalBow8G3865 GWHASIU00000004 + View
Salix brachista Sabra02G0022600 GWHAAZH00000002 + View
Salix brachista Sabra05G0180500 GWHAAZH00000005 - View
Simmondsia chinensis Sc26g0003290 GWHAASQ00000026 + View
Simmondsia chinensis Sc15g0007240 GWHAASQ00000015 - View
Simmondsia chinensis Sc18g0005210 GWHAASQ00000018 + View
Sechium edule Sed0001560 LG03 + View
Sechium edule Sed0011373 LG11 - View
Sechium edule Sed0009988 LG01 + View
Solanum lycopersicum Solyc04g080970.4 Protein SHI RELATED SEQUENCE 1 (AHRD V3.3 *** A0A2G3CQY9_CAPCH) SL4.0ch04 - View
Schrenkiella parvula Sp7g34000 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED ch7-6 - View
Schrenkiella parvula Sp5g30650 PTHR31604//PTHR31604:SF3 - FAMILY NOT NAMED // PROTEIN SHI RELATED SEQUENCE 1-RELATED ch5-7 - View
Solanum pennellii Sopen04g034580 A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC) | STYLISH 1 (STY1) | FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: in 6 processes | LOCATED IN: nucleus | EXPRESSED IN: 6 plant structures | CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal , Zinc finger, Lateral Root Primordium type 1 , Protein of unknown function DUF702 | BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related Spenn-ch04 - View
Selenicereus undatus Hund26875 Scaffold_2055 + View
Trochodendron aralioides TAR381G1719 group11 + View
Trochodendron aralioides TAR625G1372 group4 + View
Trochodendron aralioides TAR376G0411 group14 - View
Trochodendron aralioides TAR628G0913 group5 - View
Theobroma cacao Thecc.08G036500 SHI-related sequence 7 Chromosome_8 - View
Tarenaya hassleriana THA.LOC104813807 protein SHI RELATED SEQUENCE 5 NW_010965373.1 + View
Trifolium pratense TPR.G12366 Tp57577_TGAC_v2_LG7 + View
Vigna mungo VMungo1309G1130 CM024072.1 - View
Vitis vinifera GSVIVG01009812001 chr18 - View