Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold51G18767 scaffold51 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr4.692 chr4 - View
Actinidia chinensis Actinidia09839 Lachesis_group11 - View
Actinidia chinensis Actinidia28437 Lachesis_group16 - View
Actinidia chinensis Actinidia12222 Lachesis_group25 - View
Arabidopsis lyrata AL8G42220 scaffold_8 - View
Avicennia marina MSTRG.2518 ScioBoG_102835_HRSCAF_103059 - View
Avicennia marina MSTRG.23295 ScioBoG_3895_HRSCAF_3912 - View
Aquilegia oxysepala Aqoxy6G00403 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZE2GKX K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.R73VTB K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) arahy.Tifrunner.gnm1.Arahy.10 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.GJ501R K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6XFQ3U K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) arahy.Tifrunner.gnm1.Arahy.20 + View
Arabidopsis thaliana AT5G64760 regulatory particle non-ATPase subunit 5B Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a. regulatory particle non-ATPase subunit 5B (RPN5B)%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C Proteasome component (PCI) domain (InterPro:IPR000717)%3B BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit%2C putative (RPN5) (TAIR:AT5G09900.1)%3B Has 840 Blast hits to 830 proteins in 229 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 302%3B Fungi - 291%3B Plants - 115%3B Viruses - 0%3B Other Eukaryotes - 132 (source: NCBI BLink). Chr5 - View
Brassica napus C02p63550 C02 - View
Camellia sinensis var. sinensis CSS0015015 hypothetical protein EUGRSUZ_C013281, partial [Eucalyptus grandis] Chr1 - View
Cannabis sativa CANSAT01G1300 NC_044373.1 + View
Cicer arietinum L. Ca_17672_v3 Ca_LG6_v3 - View
Corylus avellana Haze_25086 Similar to RPN5A: 26S proteasome non-ATPase regulatory subunit 12 homolog A (Arabidopsis thaliana OX%3D3702) 8 + View
Coffea canephora Cc07_g16710 Putative 26S proteasome non-ATPase regulatory subunit 12 chr7 + View
Cardamine hirsuta CARHR278750 26S proteasome regulatory subunit N5 Chr8 - View
Carya illinoinensis CiPaw.04G088700 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Chr04 - View
Carya illinoinensis CiPaw.03G131400 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Chr03 - View
Citrullus lanatus ClCG02G000890 26S proteasome non-ATPase regulatory subunit CG_Chr02 + View
Cucumis melo MELO3C020972.2 26S proteasome non-ATPase regulatory subunit 12 chr11 + View
Carica papaya Cpa.g.sc72.48 supercontig_72 - View
Capsella rubella Carub.0008s2557 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) scaffold_8 - View
Cucumis sativus L. CsaV3_2G017820 26S proteasome non-ATPase regulatory subunit 12 chr2 - View
Davidia involucrata Dinv04462 GWHABJS00000021 + View
Davidia involucrata Dinv19452 GWHABJS00000014 + View
Erythranthe guttata Migut.H02459 scaffold_8 + View
Erythranthe guttata Migut.L00054 scaffold_12 - View
Eutrema salsugineum Thhalv10004227m.g K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) scaffold_6 + View
Fragaria x ananassa FAN28G2374 KOG1498 - 26S proteasome regulatory complex, subunit RPN5/PSMD12 Fvb1-1 - View
Fragaria x ananassa FAN19G2345 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Fvb1-4 + View
Fragaria x ananassa FAN26G1501 KOG1498 - 26S proteasome regulatory complex, subunit RPN5/PSMD12 Fvb1-2 + View
Fragaria x ananassa FAN23G1006 PTHR10855:SF1 - 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 Fvb1-3 + View
Glycine max Glyma.08G145200 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Gm08 + View
Glycine max Glyma.04G217500 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Gm04 - View
Glycine max Glyma.05G186600 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Gm05 + View
Lupinus albus Lalb_Chr13g0296321 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Lalb_Chr13 + View
Lotus japonicus Lj4g0024278 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) chr4 - View
Lonicera japonica Lj4A859T54 GWHAAZE00000004 - View
Lonicera japonica Lj2A569G64 GWHAAZE00000002 + View
Manihot esculenta Manes.13G081000 Chromosome13 + View
Manihot esculenta Manes.12G145900 Chromosome12 + View
Medicago truncatula Medtr8g092390 26S proteasome regulatory subunit N5 chr8 + View
Nelumbo nucifera Nn1g00896 chr1 + View
Nicotiana tabacum Nitab4.5_0001728g0070 Proteasome component (PCI) domain, Winged helix-turn-helix DNA-binding domain Nitab4.5_0001728 - View
Nicotiana tabacum Nitab4.5_0002577g0010 Winged helix-turn-helix DNA-binding domain, Proteasome component (PCI) domain Nitab4.5_0002577 + View
Olea europaea Oeu028349.2 chr18 + View
Olea europaea Oeu015842.1 scaffold1631 - View
Petunia axillaris Peaxi162Scf00025g10312 26S proteasome non-ATPase regulatory subunit 12 homolog A Peaxi162Scf00025 - View
Pisum sativum Psat7g049320 PCI domain chr7LG7 - View
Papaver somniferum PSO170G5175 NC_039360.1 - View
Populus trichocarpa Potri.005G087100 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Chr05 + View
Populus trichocarpa Potri.007G076900 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Chr07 - View
Phaseolus vulgaris Phvul.009G138000 Chr09 - View
Phaseolus vulgaris Phvul.002G267700 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) Chr02 + View
Quercus lobata QL06p031307 6 - View
Rosa chinensis RcHm_v2.0_Chr2g0118191 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim10G0145000 chr10 - View
Salvia bowleyana SalBow6G6156 GWHASIU00000002 + View
Salvia bowleyana SalBow5G0567 GWHASIU00000003 - View
Salix brachista Sabra07G0064800 GWHAAZH00000007 - View
Salix brachista Sabra05G0071900 GWHAAZH00000005 + View
Sechium edule Sed0017410 LG01 - View
Solanum lycopersicum Solyc04g051370.4 26S proteasome non-ATPase regulatory subunit 12-like protein (AHRD V3.3 *** A0A2K3MWS1_TRIPR) SL4.0ch04 - View
Schrenkiella parvula Sp2g27830 K03035 - 26S proteasome regulatory subunit N5 (PSMD12, RPN5) ch2-4 - View
Solanum pennellii Sopen04g022780 Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects. | EMBRYO DEFECTIVE 2107 (EMB2107) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, embryo development ending in seed dormancy | LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase subunit 5B Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400019701 26S proteasome subunit RPN5b ST4.03ch04 + View
Trochodendron aralioides TAR376G1223 group14 + View
Trochodendron aralioides TAR625G1099 group4 - View
Trochodendron aralioides TAR628G0368 group5 - View
Tarenaya hassleriana THA.LOC104818471 26S proteasome non-ATPase regulatory subunit 12 homolog A-like NW_010966092.1 - View
Trifolium pratense TPR.G2195 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI31G0616 NC_052233.1 - View
Tripterygium wilfordii TWI79G1157 NC_052238.1 - View
Vaccinium macrocarpon vmacro12869 Similar to RPN5A: 26S proteasome non-ATPase regulatory subunit 12 homolog A (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G1478 CM024072.1 + View
Vigna mungo VMungo0251G0756 CM024069.1 + View
Vitis vinifera GSVIVG01022276001 chr7 + View