Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold221G42734 scaffold221 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr1.520 chr1 - View
Actinidia chinensis Actinidia31804 Lachesis_group21 + View
Actinidia chinensis Actinidia32897 Lachesis_group22 - View
Actinidia chinensis Actinidia34079 Lachesis_group3 + View
Arabidopsis lyrata AL7G27590 scaffold_7 - View
Arabidopsis lyrata AL8G26390 scaffold_8 + View
Avicennia marina MSTRG.17233 ScioBoG_19743_HRSCAF_19834 + View
Avicennia marina MSTRG.8767 ScioBoG_11560_HRSCAF_11609 - View
Amaranthus hybridus Ah.07g208930 AmaHy_arrow1_Scaffold_7 + View
Aquilegia oxysepala Aqoxy7G00447 CHR07 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3M2LT7 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) arahy.Tifrunner.gnm1.Arahy.19 + View
Arabidopsis thaliana AT4G25500 arginine/serine-rich splicing factor 35 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. arginine/serine-rich splicing factor 35 (RSP35)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: nuclear speck%2C spliceosomal complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2)%3B Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10%3B Bacteria - 734%3B Metazoa - 9656%3B Fungi - 1783%3B Plants - 2169%3B Viruses - 46%3B Other Eukaryotes - 1420 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT5G52040 RNA-binding (RRM/RBD/RNP motifs) family protein encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers%2C roots%2C stems%2C and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. ATRSP41%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C RNA splicing%3B LOCATED IN: spliceosomal complex%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor 35 (TAIR:AT4G25500.4)%3B Has 506050 Blast hits to 500572 proteins in 22103 species: Archae - 10893%3B Bacteria - 305035%3B Metazoa - 98290%3B Fungi - 14007%3B Plants - 29495%3B Viruses - 35939%3B Other Eukaryotes - 12391 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0757G025 AmTr_v1.0_scaffold00069 - View
Brassica carinata BcaC09g50766 ChrC09 - View
Brassica carinata BcaC01g06153 ChrC01 + View
Brassica napus C03p18710 C03 - View
Brassica napus A03p15910 A03 - View
Brassica napus A08p21110 A08 - View
Brassica oleracea BolC3t14262H C3 - View
Brassica rapa BraA03t10881Z A03 - View
Brassica rapa BraA03t14674Z A03 + View
Brassica rapa BraA08t34061Z A08 - View
Beta vulgaris EL10Ac3g05690 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0047554 arginine/serine-rich splicing factor, putative [Ricinus communis] Chr7 - View
Cicer arietinum L. Ca_10797_v3 Ca_LG4_v3 - View
Corylus avellana Haze_13757 Similar to RS40: Serine/arginine-rich splicing factor RS40 (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc02_g03400 Arginine/serine-rich-splicing factor RSP40 chr2 - View
Coffea canephora Cc02_g37250 Hypothetical protein chr2 + View
Citrus clementina Ciclev10005021m.g scaffold_9 + View
Ceratophyllum demersum CDE11G0219 9 + View
Carpinus fangiana Cfa008278 Cfa03 + View
Cardamine hirsuta CARHR232900 arginine/serine-rich splicing factor 35 Chr7 + View
Cardamine hirsuta CARHR264980 arginine/serine-rich splicing factor 35 Chr8 + View
Carya illinoinensis CiPaw.03G102400 KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) Chr03 + View
Carya illinoinensis CiPaw.04G067700 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr04 - View
Corchorus olitorius COL.COLO4_14256 hypothetical protein AWUE01015403.1 + View
Chenopodium quinoa AUR62016033 RS40: Serine/arginine-rich splicing factor RS40 C_Quinoa_Scaffold_3256 - View
Chenopodium quinoa AUR62021238 RS40: Serine/arginine-rich splicing factor RS40 C_Quinoa_Scaffold_1783 - View
Capsella rubella Carub.0007s1549 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) scaffold_7 - View
Capsella rubella Carub.0008s1213 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) scaffold_8 + View
Davidia involucrata Dinv32425 GWHABJS00000020 + View
Davidia involucrata Dinv28487 GWHABJS00000004 - View
Davidia involucrata Dinv43759 GWHABJS00000016 + View
Durio zibethinus Duzib084G0415 NW_019167827.1 - View
Durio zibethinus Duzib205G0174 NW_019168381.1 + View
Erigeron canadensis ECA233G3558 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.K00223 Chr11 + View
Erythranthe guttata Migut.F00378 scaffold_6 - View
Eutrema salsugineum Thhalv10014293m.g scaffold_2 - View
Fragaria x ananassa FAN03G2457 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-3 - View
Fragaria x ananassa FAN01G1653 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-4 - View
Fragaria x ananassa FAN03G2658 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-3 - View
Fragaria x ananassa FAN10G4109 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7-1 - View
Fragaria x ananassa FAN06G2621 KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) Fvb7-2 + View
Fragaria x ananassa FAN06G3763 KOG0106 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) Fvb7-2 + View
Fragaria vesca FvH4_7g28991 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Fvb7 + View
Gossypium hirsutum Gohir.D12G261600 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) D12 - View
Gossypium hirsutum Gohir.A12G260700 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) A12 - View
Glycine max Glyma.20G155400 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Gm20 + View
Glycine max Glyma.10G239100 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Gm10 - View
Glycine max Glyma.03G017200 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Gm03 - View
Glycine max Glyma.07G078300 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Gm07 - View
Gossypium raimondii Gorai.008G280300 Chr08 - View
Hydrangea macrophylla Hma1.2p1_0099F.1_g048570 Hma1.2p1_0099F.1 - View
Lupinus albus Lalb_Chr06g0160981 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Lalb_Chr06 + View
Lotus japonicus LjContig00238g0025597 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Contig00238 - View
Lotus japonicus Lj3g0011397 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) chr3 - View
Lonicera japonica Lj8A29G40 GWHAAZE00000008 - View
Lonicera japonica Lj1C992T2 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_7601 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Lsat_1_v8_lg_8 - View
Magnolia biondii MBI04_g39650_MAGBIO AED:0.24 Chr04 + View
Malus domestica MD07G1264000 arginine/serine-rich splicing factor 35 Chr07 + View
Malus domestica MD01G1196700 arginine/serine-rich splicing factor 35 Chr01 + View
Manihot esculenta Manes.06G143500 Chromosome06 + View
Medicago truncatula Medtr1g101520 RNA-binding (RRM/RBD/RNP motif) family protein chr1 - View
Nelumbo nucifera Nn6g34259 chr6 - View
Nicotiana tabacum Nitab4.5_0001083g0050 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0001083 + View
Olea europaea Oeu030127.2 chr11 - View
Petunia axillaris Peaxi162Scf00021g00624 RNA-binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00021 + View
Petunia axillaris Peaxi162Scf00648g00013 Dehydration-responsive element-binding protein 1D Peaxi162Scf00648 - View
Punica granatum PGR142G1406 NC_045128.1 - View
Prunus persica Prupe.2G290100 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Pp02 + View
Populus trichocarpa Potri.002G153600 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr02 + View
Populus trichocarpa Potri.012G133600 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr12 - View
Populus trichocarpa Potri.015G135800 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr15 - View
Phaseolus vulgaris Phvul.007G066560 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) Chr07 + View
Quercus lobata QL08p050587 8 - View
Quercus lobata QL09p015981 9 - View
Rosa chinensis RcHm_v2.0_Chr1g0376701 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim09G0196200 chr09 + View
Salvia bowleyana SalBow4G1993 GWHASIU00000008 - View
Salix brachista Sabra14G0055600 GWHAAZH00000014 + View
Salix brachista Sabra12G0100400 GWHAAZH00000012 - View
Solanum lycopersicum Solyc03g026240.4 Serine/arginine-rich-splicing factor RS40 (AHRD V3.3 *** A0A0M8KTC1_NICAT) SL4.0ch03 - View
Schrenkiella parvula Sp7g23520 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) ch7-4 + View
Schrenkiella parvula Sp6g14290 K12893 - splicing factor, arginine/serine-rich 4/5/6 (SFRS4_5_6) ch6-6 + View
Solanum pennellii Sopen03g005120 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. | RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing | LOCATED IN: spliceosomal complex | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor 35 Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400017052 Splicing factor ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400014266 Splicing factor ST4.03ch03 + View
Selenicereus undatus Hund11774 Scaffold_33679 - View
Selenicereus undatus Hund04702 Scaffold_19641 + View
Theobroma cacao Thecc.03G170400 Arginine/serine-rich splicing factor 35 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104825091 serine/arginine-rich splicing factor RS40-like isoform X1 NW_010966986.1 + View
Tarenaya hassleriana THA.LOC104798738 serine/arginine-rich splicing factor RS41 isoform X1 NW_010968263.1 + View
Trifolium pratense TPR.G17412 Tp57577_TGAC_v2_scaf_229 - View
Trifolium pratense TPR.G17598 Tp57577_TGAC_v2_scaf_223 + View
Tripterygium wilfordii TWI14G0669 NC_052249.1 - View
Tripterygium wilfordii TWI39G1065 NC_052250.1 - View
Vaccinium macrocarpon vmacro09860 Similar to RS40: Serine/arginine-rich splicing factor RS40 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro06725 Similar to RS40: Serine/arginine-rich splicing factor RS40 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G1344 CM024078.1 - View
Vitis vinifera GSVIVG01010624001 chr16 + View