Gene: AT5G52040

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G52040
  • Transcript Identifier AT5G52040.6
  • Gene Type Coding gene
  • Location Chr5 : 21131881-21133318 : positive

Gene Family Information

  • ID HOM05D001628
  • #Genes/#Species 396/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G52040.6
  • symbol RS41
  • Alias ATRSP41,At-RS41,arginine/serine-rich splicing factor 41
  • full_name arginine/serine-rich splicing factor 41
  • uniprot P92966

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description ATRSP41; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor 35 (TAIR:AT4G25500.4); Has 506050 Blast hits to 500572 proteins in 22103 species: Archae - 10893; Bacteria - 305035; Metazoa - 98290; Fungi - 14007; Plants - 29495; Viruses - 35939; Other Eukaryotes - 12391 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISS, IBA
Gene OntologymRNA splicing, via spliceosome1 2
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
NAS
Gene OntologyRNA splicing3
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0031053
IGI
Gene Ontologyprimary miRNA processing4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0003729
IDA, HDA
Gene OntologymRNA binding5 6
GO:0005515
IPI
Gene Ontologyprotein binding7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
ISS
Gene Ontologyspliceosomal complex1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IBA
Gene Ontologynuclear speck2
GO:0010445
IDA
Gene Ontologynuclear dicing body4
GO:0005737
ISM
Gene Ontologycytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.3 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (RS31/40/41)