Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold138G35188 scaffold138 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G3310 LG-5 + View
Aethionema arabicum Aa31LG1G20760 LG-1 - View
Acer truncatum Atru.chr5.1840 chr5 + View
Actinidia chinensis Actinidia30130 Lachesis_group24 + View
Actinidia chinensis Actinidia37548 Lachesis_group13 + View
Actinidia chinensis Actinidia23696 Lachesis_group9 - View
Arabidopsis lyrata AL1G13680 scaffold_1 + View
Aquilegia oxysepala Aqoxy2G03747 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UG1CCZ PTHR17204//PTHR17204:SF5 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39 arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CGPP17 PTHR17204//PTHR17204:SF5 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39 arahy.Tifrunner.gnm1.Arahy.06 - View
Arabidopsis thaliana AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39%3B FUNCTIONS IN: binding%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%2C Tetratricopeptide-like helical (InterPro:IPR011990)%2C Suppressor of forked (InterPro:IPR008847)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1)%3B Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0%3B Bacteria - 599%3B Metazoa - 1588%3B Fungi - 801%3B Plants - 439%3B Viruses - 72%3B Other Eukaryotes - 418 (source: NCBI BLink). PRP39%3B INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase%3B LOCATED IN: intracellular%3B EXPRESSED IN: 28 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA-processing protein%2C HAT helix (InterPro:IPR003107)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1). Chr1 + View
Brassica carinata BcaC05g24473 ChrC05 - View
Brassica napus C05p02340 C05 + View
Brassica napus A10p02540 A10 + View
Brassica oleracea BolC5t29013H C5 + View
Brassica rapa BraA10t42523Z A10 + View
Beta vulgaris EL10Ac7g17680 PTHR17204:SF5 - PRE-MRNA-PROCESSING FACTOR 39 Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0038534 unnamed protein product [Vitis vinifera] Chr11 - View
Cannabis sativa CANSAT01G3007 NC_044373.1 - View
Corylus avellana Haze_24701 Protein of unknown function 8 + View
Coffea canephora Cc01_g17830 Tetratricopeptide repeat (TPR)-like superfamily protein chr1 - View
Citrus clementina Ciclev10018866m.g scaffold_3 - View
Carpinus fangiana Cfa002480 Cfa01 + View
Cardamine hirsuta CARHR003420 Pre-mRNA-processing factor 39 Chr1 + View
Carya illinoinensis CiPaw.04G190300 PTHR17204:SF5 - PRE-MRNA-PROCESSING FACTOR 39 Chr04 + View
Carya illinoinensis CiPaw.03G270500 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Chr03 + View
Citrullus lanatus ClCG06G001450 Pre-mRNA-processing factor 39 CG_Chr06 - View
Cucumis melo MELO3C022388.2 Pre-mRNA-processing factor 39 chr11 + View
Carica papaya Cpa.g.sc87.24 supercontig_87 + View
Chenopodium quinoa AUR62025445 prpf39: Pre-mRNA-processing factor 39 C_Quinoa_Scaffold_2773 + View
Chenopodium quinoa AUR62008790 prpf39: Pre-mRNA-processing factor 39 C_Quinoa_Scaffold_1710 - View
Capsella rubella Carub.0001s0323 PTHR17204//PTHR17204:SF5 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39 scaffold_1 + View
Cucumis sativus L. CsaV3_6G007400 Pre-mRNA-processing factor 39 chr6 - View
Daucus carota DCAR_004686 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv34672 GWHABJS00000010 - View
Davidia involucrata Dinv16397 GWHABJS00000007 + View
Durio zibethinus Duzib211G0092 NW_019168049.1 + View
Durio zibethinus Duzib133G0328 NW_019167938.1 - View
Erigeron canadensis ECA248G1198 Conyza_canadensis_scaffold:9 - View
Eucalyptus grandis Eucgr.K01429 Chr11 - View
Erythranthe guttata Migut.D00473 scaffold_4 + View
Eutrema salsugineum Thhalv10003154m.g K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) scaffold_17 + View
Eutrema salsugineum Thhalv10006844m.g K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) scaffold_5 - View
Fragaria x ananassa FAN24G2116 PTHR17204:SF5 - PRE-MRNA-PROCESSING FACTOR 39 Fvb2-2 + View
Fragaria x ananassa FAN27G1575 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Fvb2-1 - View
Fragaria vesca FvH4_2g20550 PTHR17204:SF5 - PRE-MRNA-PROCESSING FACTOR 39 Fvb2 - View
Gossypium hirsutum Gohir.D07G158300 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) D07 + View
Gossypium hirsutum Gohir.D07G210300 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) D07 + View
Gossypium hirsutum Gohir.A11G133300 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) A11 - View
Gossypium hirsutum Gohir.D11G139400 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) D11 - View
Gossypium hirsutum Gohir.A07G152100 PTHR17204//PTHR17204:SF5 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39 A07 + View
Gossypium hirsutum Gohir.A07G204300 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) A07 + View
Glycine max Glyma.19G168100 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Gm19 + View
Glycine max Glyma.03G167000 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Gm03 + View
Gossypium raimondii Gorai.007G149700 Chr07 - View
Gossypium raimondii Gorai.001G237700 Chr01 + View
Gossypium raimondii Gorai.001G181500 Chr01 + View
Helianthus annuus HanXRQChr01g0015001 Probable tetratricopeptide repeat (TPR)-like superfamily protein HanXRQChr01 - View
Hydrangea macrophylla Hma1.2p1_0273F.1_g109230 Hma1.2p1_0273F.1 - View
Lupinus albus Lalb_Chr20g0113641 PTHR17204//PTHR17204:SF5 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39 Lalb_Chr20 - View
Lupinus albus Lalb_Chr01g0019501 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Lalb_Chr01 - View
Lotus japonicus Lj1g0017598 PTHR17204//PTHR17204:SF5 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39 chr1 - View
Lonicera japonica Lj2A1143T49 GWHAAZE00000002 - View
Lonicera japonica Lj1C73G6 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_5_181380 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Lsat_1_v8_lg_5 - View
Lactuca sativa Lsat_1_v5_gn_8_92021 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Lsat_1_v8_lg_8 - View
Magnolia biondii MBI07_g23231_MAGBIO AED:0.23 Chr07 - View
Magnolia biondii MBI10_g26043_MAGBIO AED:0.20 Chr10 - View
Malus domestica MD05G1189300 Tetratricopeptide repeat (TPR)-like superfamily protein Chr05 - View
Manihot esculenta Manes.13G040100 Chromosome13 + View
Medicago truncatula Medtr7g098430 Pre-mRNA-processing factor 39 chr7 + View
Nelumbo nucifera Nn3g19779 chr3 + View
Nelumbo nucifera Nn1g02962 chr1 + View
Olea europaea Oeu052078.1 chr4 + View
Olea europaea Oeu015430.1 chr22 + View
Prunus persica Prupe.8G215900 Pp08 - View
Populus trichocarpa Potri.014G192800 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Chr14 + View
Populus trichocarpa Potri.002G257100 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) Chr02 - View
Phaseolus vulgaris Phvul.001G164500 PTHR17204:SF5 - PRE-MRNA-PROCESSING FACTOR 39 Chr01 + View
Quercus lobata QL09p041322 9 + View
Rosa chinensis RcHm_v2.0_Chr6g0286711 RcHm_v2.0_Chr6 - View
Salix brachista Sabra02G0195500 GWHAAZH00000002 - View
Sechium edule Sed0023704 LG07 + View
Schrenkiella parvula Sp2g08790 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) ch2-4 - View
Schrenkiella parvula Sp1g02900 K13217 - pre-mRNA-processing factor 39 (PRPF39, PRP39) ch1-1 + View
Solanum pennellii Sopen09g025760 PRP39 | INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase | LOCATED IN: intracellular | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein . Spenn-ch09 + View
Selenicereus undatus Hund05483 Scaffold_19641 + View
Trochodendron aralioides TAR636G1664 group1 - View
Theobroma cacao Thecc.01G250900 Tetratricopeptide repeat (TPR)-like superfamily protein Chromosome_1 - View
Tarenaya hassleriana THA.LOC104801125 LOW QUALITY PROTEIN: pre-mRNA-processing factor 39-like NW_010969548.1 - View
Tarenaya hassleriana THA.LOC104826051 pre-mRNA-processing factor 39-like NW_010967707.1 + View
Trifolium pratense TPR.G20054 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI12G1034 NC_052243.1 + View
Tripterygium wilfordii TWI18G0730 NC_052241.1 - View
Utricularia gibba unitig_22.g6301 unitig_22 + View
Vaccinium macrocarpon vmacro14798 Similar to PRPF39: Pre-mRNA-processing factor 39 (Homo sapiens OX%3D9606) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G2023 CM024070.1 + View
Vitis vinifera GSVIVG01028421001 chr7 + View