Gene: AT1G04080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G04080
  • Transcript Identifier AT1G04080.3
  • Gene Type Coding gene
  • Location Chr1 : 1051803-1056550 : positive

Gene Family Information

  • ID HOM05D002279
  • #Genes/#Species 296/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G04080.3
  • symbol PRP39
  • uniprot Q93ZR3

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description PRP39; FUNCTIONS IN: binding; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1); Has 3917 Blast hits to 3180 proteins in 483 species: Archae - 0; Bacteria - 599; Metazoa - 1588; Fungi - 801; Plants - 439; Viruses - 72; Other Eukaryotes - 418 (source: NCBI BLink).
  • Computational description PRP39; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
Gene OntologyRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0048510
IMP
Gene Ontologyregulation of timing of transition from vegetative to reproductive phase1
GO:0000395
IBA
Gene OntologymRNA 5'-splice site recognition2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005685
IBA
Gene OntologyU1 snRNP2
GO:0071004
IBA
Gene OntologyU2-type prespliceosome2
GO:0000243
IBA
Gene Ontologycommitment complex2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR003107 HAT (Half-A-TPR) repeat
Mapman id Description
16.2.1.1.5.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP39)