Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold104G30249 scaffold104 - View
SGA_v2.0_scaffold44G16844 scaffold44 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr12.2404 chr12 - View
Actinidia chinensis Actinidia18678 Lachesis_group3 - View
Actinidia chinensis Actinidia08691 Lachesis_group6 + View
Actinidia chinensis Actinidia34262 Lachesis_group3 - View
Actinidia chinensis Actinidia28279 Lachesis_group21 + View
Arabidopsis lyrata AL5G29150 scaffold_5 - View
Avicennia marina MSTRG.8614 ScioBoG_11560_HRSCAF_11609 + View
Avicennia marina MSTRG.34 ScioBoG_102831_HRSCAF_103044 + View
Amaranthus hybridus Ah.12g053320 Polyadenylate-binding protein-interacting protein 12 (PABP-interacting protein 12) (Poly(A)-binding protein-interacting protein 12) (PAM2-containing protein CID12) (Protein CTC-INTERACTING DOMAIN 12) (RNA-binding protein 37) (AtRBP37) AmaHy_arrow1_Scaffold_12 - View
Aquilegia oxysepala Aqoxy5G04341 CHR05 + View
Arabidopsis thaliana AT5G24440 CTC-interacting domain 13 RNA-binding protein%2C putative. Contains PAM2%2C PABC binding domain. CTC-interacting domain 13 (CID13)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 10 (TAIR:AT3G49390.2)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT3G49390 CTC-interacting domain 10 RNA-binding protein%2C putative%2C RNA-binding protein RBP37%2C Arabidopsis thaliana%2C PIR:T04196.Member of a family of PAB2 domain containing proteins. CTC-interacting domain 10 (CID10)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.1)%3B Has 1677 Blast hits to 1486 proteins in 221 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 724%3B Fungi - 214%3B Plants - 535%3B Viruses - 0%3B Other Eukaryotes - 204 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC01g02406 ChrC01 - View
Brassica carinata BcaNung02021 Contig686 + View
Brassica carinata BcaNung01235 Contig469 - View
Brassica carinata BcaB01g00714 ChrB01 + View
Brassica carinata BcaC09g49946 ChrC09 - View
Brassica napus C07p43230 C07 + View
Brassica napus A01p24780 A01 + View
Brassica napus A09p06490 A09 + View
Brassica napus C01p30910 C01 + View
Brassica napus A06p35280 A06 - View
Brassica napus A06p18330 A06 + View
Brassica napus C08p24430 C08 - View
Brassica oleracea BolC9t53636H C9 + View
Brassica oleracea BolC1t03026H C1 + View
Brassica oleracea BolC7t44848H C7 + View
Brassica oleracea BolC8t50059H C8 - View
Brassica rapa BraA06t24917Z A06 + View
Brassica rapa BraA09t36292Z A09 + View
Brassica rapa BraA06t26454Z A06 - View
Beta vulgaris EL10Ac3g05190 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0000207 PREDICTED: polyadenylate-binding protein-interacting protein 12-like [Sesamum indicum] Chr7 - View
Capsicum annuum CAN.G303.9 PGAv.1.6.scaffold303 - View
Cicer arietinum L. Ca_16768_v3 Ca_LG5_v3 - View
Corylus avellana Haze_09195 Similar to CID11: Polyadenylate-binding protein-interacting protein 11 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc02_g00890 CTC-interacting domain 12 chr2 + View
Citrus clementina Ciclev10023768m.g scaffold_3 + View
Citrus clementina Ciclev10020742m.g scaffold_3 - View
Ceratophyllum demersum CDE11G0788 9 - View
Ceratophyllum demersum CDE09G0750 7 + View
Ceratophyllum demersum CDE11G0185 9 - View
Carpinus fangiana Cfa011904 Cfa05 + View
Carpinus fangiana Cfa016170 Cfa06 + View
Cardamine hirsuta CARHR158360 CTC-interacting domain 10 Chr5 - View
Carya illinoinensis CiPaw.06G041700 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Chr06 + View
Carya illinoinensis CiPaw.11G110600 PF00076//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Chr11 + View
Carya illinoinensis CiPaw.12G076200 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Chr12 + View
Cucumis melo MELO3C024854.2 polyadenylate-binding protein-interacting protein 12 chr07 + View
Carica papaya Cpa.g.sc3.149 supercontig_3 + View
Chenopodium quinoa AUR62006013 CID11: Polyadenylate-binding protein-interacting protein 11 C_Quinoa_Scaffold_1001 + View
Capsella rubella Carub.0006s2227 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) scaffold_6 - View
Capsella rubella Carub.0005s1568 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) scaffold_5 + View
Cucumis sativus L. CsaV3_4G008520 polyadenylate-binding protein-interacting protein 12 chr4 - View
Daucus carota DCAR_008978 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_010576 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_014561 hypothetical protein DCARv2_Chr4 + View
Daucus carota DCAR_020366 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv35377 GWHABJS00000009 + View
Durio zibethinus Duzib068G1119 NW_019167838.1 - View
Durio zibethinus Duzib068G0109 NW_019167838.1 + View
Durio zibethinus Duzib084G0095 NW_019167827.1 - View
Durio zibethinus Duzib084G0193 NW_019167827.1 + View
Erigeron canadensis ECA232G0760 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.E01065 Chr05 - View
Eucalyptus grandis Eucgr.K00426 Chr11 - View
Eucalyptus grandis Eucgr.A01414 Chr01 - View
Erythranthe guttata Migut.F00994 scaffold_6 + View
Erythranthe guttata Migut.F00157 scaffold_6 + View
Eutrema salsugineum Thhalv10010470m.g PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) scaffold_16 + View
Fragaria x ananassa FAN01G1264 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb7-4 + View
Fragaria x ananassa FAN10G1132 KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein Fvb7-1 - View
Fragaria x ananassa FAN04G2353 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Fvb5-4 + View
Fragaria x ananassa FAN10G0213 KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein Fvb7-1 - View
Gossypium hirsutum Gohir.D11G016100 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) D11 - View
Gossypium hirsutum Gohir.A08G104300 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) A08 + View
Gossypium hirsutum Gohir.A11G016300 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) A11 - View
Gossypium hirsutum Gohir.D08G115900 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) D08 - View
Gossypium raimondii Gorai.012G000600 Chr12 - View
Gossypium raimondii Gorai.004G124800 Chr04 - View
Gossypium raimondii Gorai.007G016900 Chr07 - View
Hydrangea macrophylla Hma1.2p1_0094F.1_g047300 Hma1.2p1_0094F.1 - View
Lupinus albus Lalb_Chr11g0067341 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Lalb_Chr11 - View
Lupinus albus Lalb_Chr23g0271881 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Lalb_Chr23 - View
Lonicera japonica Lj3C897G5 GWHAAZE00000003 + View
Lonicera japonica Lj1C1027G15 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_9_50120 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Lsat_1_v8_lg_9 + View
Malus domestica MD07G1298200 CTC-interacting domain 12 Chr07 - View
Malus domestica MD01G1227700 CTC-interacting domain 12 Chr01 - View
Manihot esculenta Manes.02G001350 Chromosome02 + View
Nicotiana tabacum Nitab4.5_0000319g0140 RNA recognition motif domain, Ataxin-2, C-terminal, Nucleotide-binding, alpha-beta plait Nitab4.5_0000319 + View
Olea europaea Oeu055382.2 chr12 - View
Petunia axillaris Peaxi162Scf00074g00146 CTC-interacting domain 11 Peaxi162Scf00074 + View
Petunia axillaris Peaxi162Scf00618g00017 CTC-interacting domain 11 Peaxi162Scf00618 + View
Petunia axillaris Peaxi162Scf00542g00619 CTC-interacting domain 11 Peaxi162Scf00542 + View
Punica granatum PGR042G2208 NC_045130.1 + View
Punica granatum PGR042G3776 NC_045130.1 + View
Punica granatum PGR142G2198 NC_045128.1 + View
Prunus persica Prupe.2G318100 KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein Pp02 - View
Pisum sativum Psat5g072680 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 + View
Papaver somniferum PSO782G2033 NC_039365.1 - View
Papaver somniferum PSO063G3832 NC_039364.1 + View
Papaver somniferum PSO384G3787 NC_039368.1 + View
Populus trichocarpa Potri.012G022000 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) Chr12 + View
Populus trichocarpa Potri.001G448800 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Chr01 - View
Rhododendron simsii Rhsim09G0209300 chr09 - View
Rhododendron simsii Rhsim03G0214600 chr03 - View
Salvia bowleyana SalBow6G2901 GWHASIU00000002 + View
Salvia bowleyana SalBow2G0210 GWHASIU00000007 + View
Salix brachista Sabra15G0003800 GWHAAZH00000015 + View
Simmondsia chinensis Sc19g0000630 GWHAASQ00000019 + View
Simmondsia chinensis Sc13g0010220 GWHAASQ00000013 - View
Sechium edule Sed0005921 LG07 - View
Sechium edule Sed0010724 LG13 + View
Solanum lycopersicum Solyc06g053300.3 Polyadenylate-binding protein (AHRD V3.3 *** A0A2K3NXT2_TRIPR) SL4.0ch06 - View
Schrenkiella parvula Sp2g22890 KOG0131 - Splicing factor 3b, subunit 4 ch2-4 + View
Schrenkiella parvula Sp5g12680 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) ch5-1 + View
Solanum pennellii Sopen03g022120 RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. | CTC-interacting domain 11 (CID11) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 12 Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG402003209 RNA-binding protein ST4.03ch03 - View
Selenicereus undatus Hund21052 Scaffold_33673 - View
Trochodendron aralioides TAR636G0272 group1 + View
Theobroma cacao Thecc.03G218400 CTC-interacting domain 11 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104814948 polyadenylate-binding protein-interacting protein 10-like NW_010965541.1 - View
Tarenaya hassleriana THA.LOC104803339 polyadenylate-binding protein-interacting protein 10 NW_010970743.1 - View
Tarenaya hassleriana THA.LOC104815340 polyadenylate-binding protein-interacting protein 11-like isoform X1 NW_010960187.1 - View
Tripterygium wilfordii TWI23G1214 NC_052239.1 + View
Vaccinium macrocarpon vmacro06432 Similar to CID11: Polyadenylate-binding protein-interacting protein 11 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01019674001 chr2 - View