Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold171G38920 scaffold171 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G4890 LG-8 - View
Acer truncatum Atru.chr9.1752 chr9 - View
Actinidia chinensis Actinidia39846 Lachesis_group1 + View
Arabidopsis lyrata AL3G31190 scaffold_3 - View
Avicennia marina MSTRG.9293 ScioBoG_12795_HRSCAF_12848 + View
Avicennia marina MSTRG.4568 ScioBoG_102837_HRSCAF_103074 + View
Arabidopsis thaliana AT3G18035 winged-helix DNA-binding transcription factor family protein A linker histone like protein HON4%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: nucleosome assembly%3B LOCATED IN: nucleus%2C nucleosome%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991)%2C A.T hook-like (InterPro:IPR020478)%2C AT hook%2C DNA-binding motif (InterPro:IPR017956)%2C Histone H1/H5 (InterPro:IPR005818)%3B BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1)%3B Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0%3B Bacteria - 351%3B Metazoa - 868%3B Fungi - 344%3B Plants - 528%3B Viruses - 17%3B Other Eukaryotes - 193 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC09g48763 ChrC09 - View
Brassica napus C05p48190 C05 + View
Brassica napus A05p31750 A05 + View
Brassica oleracea BolC6t35457H C6 - View
Camellia sinensis var. sinensis CSS0006846 PREDICTED: histone H1 [Vitis vinifera] Chr2 + View
Camellia sinensis var. sinensis CSS0036038 PREDICTED: histone H1 [Vitis vinifera] Chr15 - View
Capsicum annuum CAN.G1129.17 PGAv.1.6.scaffold1129 - View
Cicer arietinum L. Ca_17205_v3 Ca_LG6_v3 - View
Corylus avellana Haze_18809 Similar to HMGIY2: HMG-Y-related protein A (Zea mays OX%3D4577) 7 + View
Coffea canephora Cc04_g06460 Putative high mobility group A5 chr4 - View
Citrus clementina Ciclev10008667m.g scaffold_1 - View
Carpinus fangiana Cfa019681 Cfa08 - View
Carya illinoinensis CiPaw.16G091800 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Chr16 + View
Carica papaya Cpa.g.sc3.415 supercontig_3 - View
Capsella rubella Carub.0003s1775 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED scaffold_3 - View
Davidia involucrata Dinv10182 GWHABJS00000006 - View
Davidia involucrata Dinv18258 GWHABJS00000019 - View
Eucalyptus grandis Eucgr.B00872 Chr02 + View
Erythranthe guttata Migut.D01563 scaffold_4 - View
Eutrema salsugineum Thhalv10020566m.g PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED scaffold_13 + View
Fragaria x ananassa FAN13G3137 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Fvb5-2 - View
Fragaria x ananassa FAN08G2597 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Fvb5-3 + View
Fragaria x ananassa FAN18G3362 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Fvb5-1 - View
Fragaria x ananassa FAN04G1779 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Fvb5-4 - View
Fragaria vesca FvH4_5g17210 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Fvb5 - View
Lotus japonicus Lj2g0013992 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED chr2 + View
Lotus japonicus Lj4g0004392 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED chr4 - View
Lonicera japonica Lj5A155T96 GWHAAZE00000005 + View
Malus domestica MD06G1230400 high mobility group A5 Chr06 + View
Malus domestica MD14G1235000 high mobility group A5 Chr14 + View
Medicago truncatula Medtr8g106980 linker histone H1 and h5 family protein chr8 + View
Petunia axillaris Peaxi162Scf00683g00148 DNA-binding protein [Nicotiana tabacum] Peaxi162Scf00683 - View
Punica granatum PGR083G2772 NC_045133.1 + View
Prunus persica Prupe.5G231600 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Pp05 + View
Papaver somniferum PSO017G4429 NC_039362.1 + View
Papaver somniferum PSO478G1517 NC_039361.1 - View
Populus trichocarpa Potri.015G040200 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Chr15 - View
Populus trichocarpa Potri.012G048500 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Chr12 - View
Phaseolus vulgaris Phvul.002G328400 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED Chr02 + View
Quercus lobata QL10p028134 10 + View
Rosa chinensis RcHm_v2.0_Chr7g0178581 RcHm_v2.0_Chr7 + View
Salvia bowleyana SalBow1G0879 GWHASIU00000001 - View
Salix brachista Sabra12G0034100 GWHAAZH00000012 - View
Salix brachista Sabra15G0056800 GWHAAZH00000015 + View
Solanum lycopersicum Solyc03g119130.3 HMG-Y-related protein A (AHRD V3.3 *-* A0A1J3HLT7_NOCCA) SL4.0ch03 + View
Schrenkiella parvula Sp3g16150 PTHR11467//PTHR11467:SF33 - HISTONE H1/H5 // SUBFAMILY NOT NAMED ch3-1 - View
Solanum pennellii Sopen03g038020 hypothetical protein Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400005735 DNA-binding protein ST4.03ch03 + View
Theobroma cacao Thecc.03G053100 Winged-helix DNA-binding transcription factor family protein Chromosome_3 + View
Tarenaya hassleriana THA.LOC104820353 putative DNA-binding protein At1g48610 NW_010966178.1 - View
Trifolium pratense TPR.G12869 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI81G0813 NC_052251.1 - View
Vaccinium macrocarpon vmacro17784 Similar to HMGIY2: HMG-Y-related protein A (Zea mays OX%3D4577) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0251G1191 CM024069.1 + View
Vitis vinifera GSVIVG01008411001 chr17 - View