Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold92G28228 scaffold92 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr13.286 chr13 + View
Actinidia chinensis Actinidia29752 Lachesis_group27 - View
Arabidopsis lyrata AL2G35770 scaffold_2 - View
Arabidopsis lyrata AL1G32740 scaffold_1 - View
Avicennia marina MSTRG.24240 ScioBoG_4088_HRSCAF_4107 + View
Avicennia marina MSTRG.25251 ScioBoG_4119_HRSCAF_4138 - View
Aquilegia oxysepala Aqoxy5G01800 CHR05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DIS46Y PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.17 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1HBP31 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.C4UQ0G PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4VL9ZK PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.06 - View
Arabidopsis thaliana AT1G20010 tubulin beta-5 chain beta tubulin tubulin beta-5 chain (TUB5)%3B FUNCTIONS IN: structural constituent of cytoskeleton%3B INVOLVED IN: microtubule-based process%3B LOCATED IN: tubulin complex%2C cell wall%2C plasma membrane%2C chloroplast%2C membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453)%2C Tubulin (InterPro:IPR000217)%2C Tubulin/FtsZ%2C GTPase domain (InterPro:IPR003008)%2C Tubulin/FtsZ%2C N-terminal (InterPro:IPR019746)%2C Tubulin/FtsZ%2C C-terminal (InterPro:IPR008280)%2C Beta tubulin%2C autoregulation binding site (InterPro:IPR013838)%2C Tubulin%2C conserved site (InterPro:IPR017975)%2C Tubulin/FtsZ%2C 2-layer sandwich domain (InterPro:IPR018316)%3B BEST Arabidopsis thaliana protein match is: tubulin beta-1 chain (TAIR:AT1G75780.1)%3B Has 23676 Blast hits to 23579 proteins in 4895 species: Archae - 37%3B Bacteria - 47%3B Metazoa - 4468%3B Fungi - 14216%3B Plants - 1551%3B Viruses - 0%3B Other Eukaryotes - 3357 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G75780 tubulin beta-1 chain beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses tubulin beta-1 chain (TUB1)%3B FUNCTIONS IN: structural molecule activity%2C GTP binding%2C GTPase activity%3B INVOLVED IN: response to light stimulus%2C unidimensional cell growth%3B LOCATED IN: vacuole%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453)%2C Tubulin (InterPro:IPR000217)%2C Tubulin/FtsZ%2C GTPase domain (InterPro:IPR003008)%2C Tubulin/FtsZ%2C N-terminal (InterPro:IPR019746)%2C Tubulin/FtsZ%2C C-terminal (InterPro:IPR008280)%2C Beta tubulin%2C autoregulation binding site (InterPro:IPR013838)%2C Tubulin%2C conserved site (InterPro:IPR017975)%2C Tubulin/FtsZ%2C 2-layer sandwich domain (InterPro:IPR018316)%3B BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain (TAIR:AT1G20010.1)%3B Has 23671 Blast hits to 23575 proteins in 4891 species: Archae - 36%3B Bacteria - 42%3B Metazoa - 4470%3B Fungi - 14216%3B Plants - 1549%3B Viruses - 0%3B Other Eukaryotes - 3358 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g47063 ChrC08 - View
Brassica napus A07p41320 A07 - View
Brassica napus C06p49730 C06 - View
Brassica oleracea BolC6t40013H C6 - View
Brassica rapa BraA07t31665Z A07 - View
Beta vulgaris EL10Ac1g02189 2.4.2.1 - Purine-nucleoside phosphorylase / PNPase Chr1_EL10_PGA_scaffold3 + View
Camellia sinensis var. sinensis CSS0046175 PREDICTED: tubulin beta chain [Beta vulgaris subsp. vulgaris] Chr9 - View
Camellia sinensis var. sinensis CSS0011488 unnamed protein product [Coffea canephora] Contig61 - View
Capsicum annuum CAN.G311.34 PGAv.1.6.scaffold311 - View
Corylus avellana Haze_22638 Similar to TUBB1: Tubulin beta-1 chain (Arabidopsis thaliana OX%3D3702) 3 - View
Coffea canephora Cc10_g01640 Tubulin beta-1 chain chr10 + View
Citrus clementina Ciclev10001140m.g scaffold_5 - View
Ceratophyllum demersum CDE05G1380 3 + View
Ceratophyllum demersum CDE05G3250 3 - View
Carpinus fangiana Cfa013955 Cfa05 - View
Cardamine hirsuta CARHR069200 Tubulin beta-1 chain Chr2 - View
Cardamine hirsuta CARHR020480 tubulin beta-5 chain Chr1 - View
Carya illinoinensis CiPaw.07G149300 PTHR11588:SF97 - TUBULIN BETA-4 CHAIN-RELATED Chr07 + View
Carya illinoinensis CiPaw.08G066700 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED Chr08 - View
Citrullus lanatus ClCG08G014260 Tubulin beta chain, putative CG_Chr08 + View
Cucumis melo MELO3C011016.2 tubulin beta chain chr03 + View
Corchorus olitorius COL.COLO4_26142 Tubulin AWUE01019210.1 + View
Carica papaya Cpa.g.sc26.49 supercontig_26 - View
Chenopodium quinoa AUR62041904 TUBB1: Tubulin beta-1 chain C_Quinoa_Scaffold_1002 + View
Capsella rubella Carub.0001s1954 K07375 - tubulin beta (TUBB) scaffold_1 - View
Capsella rubella Carub.0002s2263 K07375 - tubulin beta (TUBB) scaffold_2 - View
Cucumis sativus L. CsaV3_2G029570 Tubulin beta chain chr2 - View
Durio zibethinus Duzib093G1931 NW_019167937.1 - View
Durio zibethinus Duzib116G0882 NW_019167949.1 + View
Durio zibethinus Duzib041G0603 NW_019167826.1 + View
Eucalyptus grandis Eucgr.F01663 Chr06 - View
Erythranthe guttata Migut.C00841 scaffold_3 - View
Erythranthe guttata Migut.N03164 scaffold_14 - View
Eutrema salsugineum Thhalv10018544m.g PTHR11588:SF135 - TUBULIN BETA-1 CHAIN scaffold_9 + View
Fragaria x ananassa FAN20G0202 PTHR11588:SF97 - TUBULIN BETA-4 CHAIN-RELATED Fvb2-3 - View
Fragaria x ananassa FAN15G3185 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED Fvb2-4 - View
Fragaria x ananassa FAN27G3205 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED Fvb2-1 + View
Fragaria vesca FvH4_2g38400 PTHR11588//PTHR11588:SF122//PTHR11588:SF97 - TUBULIN // SUBFAMILY NOT NAMED // TUBULIN BETA-4 CHAIN-RELATED Fvb2 + View
Gossypium hirsutum Gohir.D05G189300 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED D05 + View
Gossypium hirsutum Gohir.A06G003600 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED A06 + View
Gossypium hirsutum Gohir.A05G256800 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED A05 + View
Gossypium hirsutum Gohir.D06G006500 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED D06 + View
Gossypium hirsutum Gohir.A01G111100 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED A01 + View
Gossypium hirsutum Gohir.D01G097800 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED D01 + View
Gossypium hirsutum Gohir.A05G186400 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED A05 + View
Glycine max Glyma.06G024100 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Gm06 + View
Glycine max Glyma.17G258300 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Gm17 - View
Glycine max Glyma.14G219300 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Gm14 - View
Glycine max Glyma.04G023900 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Gm04 + View
Gossypium raimondii Gorai.002G123400 Chr02 + View
Gossypium raimondii Gorai.010G003800 Chr10 + View
Gossypium raimondii Gorai.009G194500 Chr09 + View
Gossypium raimondii Gorai.009G269800 Chr09 + View
Hydrangea macrophylla Hma1.2p1_0638F.1_g193880 Hma1.2p1_0638F.1 - View
Hydrangea macrophylla Hma1.2p1_0023F.1_g015480 Hma1.2p1_0023F.1 - View
Lupinus albus Lalb_Chr22g0354311 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Lalb_Chr22 + View
Lupinus albus Lalb_Chr24g0398701 PTHR11588:SF97 - TUBULIN BETA-4 CHAIN-RELATED Lalb_Chr24 + View
Lupinus albus Lalb_Chr11g0061881 PTHR11588//PTHR11588:SF122 - TUBULIN // SUBFAMILY NOT NAMED Lalb_Chr11 + View
Lupinus albus Lalb_Chr14g0369921 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Lalb_Chr14 - View
Lotus japonicus Lj5g0021114 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED chr5 - View
Lonicera japonica Lj4C23T4 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_8_30681 PTHR11588:SF97 - TUBULIN BETA-4 CHAIN-RELATED Lsat_1_v8_lg_8 + View
Magnolia biondii MBI05_g26893_MAGBIO AED:0.41 Chr05 + View
Malus domestica MD15G1011800 tubulin beta-1 chain Chr15 + View
Malus domestica MD08G1012800 tubulin beta-1 chain Chr08 + View
Manihot esculenta Manes.05G147000 Chromosome05 + View
Medicago truncatula Medtr3g113970 tubulin beta-1 chain chr3 - View
Olea europaea Oeu027531.1 chr18 + View
Olea europaea Oeu046276.1 chr10 + View
Petunia axillaris Peaxi162Scf00438g00824 tubulin beta-1 chain Peaxi162Scf00438 - View
Punica granatum PGR083G0307 NC_045133.1 + View
Prunus persica Prupe.1G364800 PTHR11588:SF97 - TUBULIN BETA-4 CHAIN-RELATED Pp01 + View
Populus trichocarpa Potri.002G021800 PTHR11588:SF116 - TUBULIN BETA-5 CHAIN Chr02 + View
Populus trichocarpa Potri.005G239900 PTHR11588:SF116 - TUBULIN BETA-5 CHAIN Chr05 - View
Phaseolus vulgaris Phvul.009G017300 PTHR11588//PTHR11588:SF118 - TUBULIN // SUBFAMILY NOT NAMED Chr09 - View
Quercus lobata QL02p011677 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0302901 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim06G0021300 chr06 + View
Salvia bowleyana SalBow8G5164 GWHASIU00000004 + View
Salvia bowleyana SalBow7G2828 GWHASIU00000005 + View
Salix brachista Sabra05G0185400 GWHAAZH00000005 - View
Simmondsia chinensis Sc15g0004950 GWHAASQ00000015 + View
Simmondsia chinensis Sc02g0008590 GWHAASQ00000002 - View
Sechium edule Sed0002768 LG11 - View
Sechium edule Sed0024149 LG03 + View
Solanum lycopersicum Solyc04g081490.3 beta-tubulin SL4.0ch04 - View
Schrenkiella parvula Sp5g30900 PTHR11588//PTHR11588:SF97 - TUBULIN // TUBULIN BETA-4 CHAIN-RELATED ch5-7 - View
Solanum pennellii Sopen04g035100 Tubulin/FtsZ, GTPase domain, Tubulin beta-2 chain (Beta-2 tubulin) - Solanum tuberosum (Potato), beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses | tubulin beta-1 chain (TUB1) | FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity | INVOLVED IN: response to light stimulus, unidimensional cell growth | LOCATED IN: vacuole | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Beta tubulin , Tubulin , Tubulin/FtsZ, GTPase domain , Tubulin/FtsZ, N-terminal , Tubulin/FtsZ, C-terminal , Beta tubulin, autoregulation binding site , Tubulin, conserved site , Tubulin/FtsZ, 2-layer sandwich domain | BEST Arabidopsis thaliana protein match is: tubulin beta-5 chain Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG400009938 Beta-tubulin ST4.03ch04 - View
Trochodendron aralioides TAR376G0789 group14 - View
Trochodendron aralioides TAR628G0084 group5 - View
Trochodendron aralioides TAR381G1669 group11 + View
Theobroma cacao Thecc.08G045000 Tubulin beta-1 chain Chromosome_8 - View
Tarenaya hassleriana THA.LOC104809488 tubulin beta-5 chain NW_010960187.1 - View
Tarenaya hassleriana THA.LOC104811413 tubulin beta-1 chain-like NW_010965372.1 - View
Tarenaya hassleriana THA.LOC104813787 tubulin beta-1 chain NW_010965373.1 + View
Tripterygium wilfordii TWI56G0823 NC_052242.1 - View
Tripterygium wilfordii TWI36G1061 NC_052237.1 - View
Tripterygium wilfordii TWI12G0028 NC_052243.1 - View
Vaccinium macrocarpon vmacro07584 Similar to TUBB3: Tubulin beta-3 chain (Oryza sativa subsp. japonica OX%3D39947) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G0769 CM024073.1 - View
Vigna mungo VMungo1309G3054 CM024072.1 - View
Vitis vinifera GSVIVG01009913001 chr18 - View