Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold144G35840 scaffold144 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G27710 LG-1 - View
Aethionema arabicum Aa31LG9G11060 LG-9 - View
Acer truncatum Atru.chr9.2049 chr9 + View
Acer truncatum Atru.chr5.625 chr5 - View
Actinidia chinensis Actinidia04214 Lachesis_group6 + View
Actinidia chinensis Actinidia01399 Lachesis_group23 + View
Arabidopsis lyrata AL6G45270 scaffold_6 + View
Arabidopsis lyrata AL4G45640 scaffold_4 - View
Avicennia marina MSTRG.1821 ScioBoG_102834_HRSCAF_103055 + View
Amaranthus hybridus Ah.12g052260 Protein SPA1-RELATED 2 AmaHy_arrow1_Scaffold_12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3S4NQ1 KOG0316//KOG1188//KOG1446 - Conserved WD40 repeat-containing protein // WD40 repeat protein // Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DBE5X7 K16240 - protein suppressor of PHYA-105 1 (SPA1) arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J2TPJU K16240 - protein suppressor of PHYA-105 1 (SPA1) arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.NZI24B KOG1188//KOG1446 - WD40 repeat protein // Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.S6JTSH K16240 - protein suppressor of PHYA-105 1 (SPA1) arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT2G46340 SPA (suppressor of phyA-105) protein family Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate%2C putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light%2C the abundance of SPA1 protein exhibited circadian regulation%2C whereas under constant darkness%2C SPA1 protein levels remained unchanged. In addition%2C the spa1-3 mutation slightly shortened circadian period of CCA1%2C TOC1/PRR1 and SPA1 transcript accumulation under constant light. SUPPRESSOR OF PHYA-105 1 (SPA1)%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: SPA1-related 2 (TAIR:AT4G11110.1)%3B Has 31438 Blast hits to 19748 proteins in 684 species: Archae - 32%3B Bacteria - 4770%3B Metazoa - 12431%3B Fungi - 6743%3B Plants - 3442%3B Viruses - 2%3B Other Eukaryotes - 4018 (source: NCBI BLink). Chr2 - View
Arabidopsis thaliana AT4G11110 SPA1-related 2 Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. SPA1-related 2 (SPA2)%3B FUNCTIONS IN: protein binding%2C signal transducer activity%3B INVOLVED IN: protein amino acid phosphorylation%3B LOCATED IN: CUL4 RING ubiquitin ligase complex%2C heterotrimeric G-protein complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782)%2C WD40 repeat%2C conserved site (InterPro:IPR019775)%2C WD40 repeat (InterPro:IPR001680)%2C Serine/threonine-protein kinase-like domain (InterPro:IPR017442)%2C Protein kinase-like domain (InterPro:IPR011009)%2C G-protein beta WD-40 repeat%2C region (InterPro:IPR020472)%2C WD40 repeat-like-containing domain (InterPro:IPR011046)%2C Protein kinase%2C catalytic domain (InterPro:IPR000719)%2C WD40-repeat-containing domain (InterPro:IPR017986)%2C WD40/YVTN repeat-like-containing domain (InterPro:IPR015943)%2C WD40 repeat%2C subgroup (InterPro:IPR019781)%3B BEST Arabidopsis thaliana protein match is: SPA (suppressor of phyA-105) protein family (TAIR:AT2G46340.1)%3B Has 34047 Blast hits to 20982 proteins in 883 species: Archae - 38%3B Bacteria - 5461%3B Metazoa - 12841%3B Fungi - 7307%3B Plants - 4015%3B Viruses - 10%3B Other Eukaryotes - 4375 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaC04g21108 ChrC04 + View
Brassica carinata BcaC01g05076 ChrC01 + View
Brassica carinata BcaC02g12697 ChrC02 + View
Brassica carinata BcaB01g03223 ChrB01 + View
Brassica napus A09p28110 A09 - View
Brassica napus C09p35610 C09 - View
Brassica napus A05p01450 A05 + View
Brassica oleracea BolC9t56397H C9 - View
Brassica rapa BraA09t38375Z A09 - View
Beta vulgaris EL10Ac1g00310 K16240 - protein suppressor of PHYA-105 1 (SPA1) Chr1_EL10_PGA_scaffold3 + View
Beta vulgaris EL10Ac5g12880 K16240 - protein suppressor of PHYA-105 1 (SPA1) Chr5_EL10_PGA_scaffold2 - View
Camellia sinensis var. sinensis CSS0001264 PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Vitis vinifera] Chr3 - View
Camellia sinensis var. sinensis CSS0035979 PREDICTED: protein SPA1-RELATED 2 isoform X1 [Vitis vinifera] Chr14 - View
Camellia sinensis var. sinensis CSS0034663 PREDICTED: protein SPA1-RELATED 2-like [Sesamum indicum] Chr12 - View
Cicer arietinum L. Ca_24522_v3 Ca_LG8_v3 + View
Corylus avellana Haze_08673 Similar to SPA2: Protein SPA1-RELATED 2 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc08_g15740 Putative Protein SPA1-RELATED 2 chr8 - View
Coffea canephora Cc02_g39010 Putative Protein SUPPRESSOR OF PHYA-105 1 chr2 - View
Citrus clementina Ciclev10018610m.g scaffold_3 + View
Ceratophyllum demersum CDE04G3769 2 - View
Ceratophyllum demersum CDE03G0300 12 + View
Cardamine hirsuta CARHR141620 WD-40 repeat family protein Chr4 - View
Cardamine hirsuta CARHR255480 WD-40 repeat family protein Chr8 - View
Carya illinoinensis CiPaw.12G085100 K16240 - protein suppressor of PHYA-105 1 (SPA1) Chr12 + View
Carya illinoinensis CiPaw.11G124200 K16240 - protein suppressor of PHYA-105 1 (SPA1) Chr11 + View
Citrullus lanatus ClCG01G002030 Ubiquitin ligase protein cop1, putative CG_Chr01 + View
Cucumis melo MELO3C005738.2 protein SPA1-RELATED 2 chr09 - View
Corchorus olitorius COL.COLO4_21724 hypothetical protein AWUE01017755.1 + View
Carica papaya Cpa.g.sc122.30 supercontig_122 - View
Chenopodium quinoa AUR62023494 SPA1: Protein SUPPRESSOR OF PHYA-105 1 C_Quinoa_Scaffold_1606 + View
Chenopodium quinoa AUR62010805 SPA2: Protein SPA1-RELATED 2 C_Quinoa_Scaffold_1280 - View
Chenopodium quinoa AUR62019802 SPA2: Protein SPA1-RELATED 2 C_Quinoa_Scaffold_1480 - View
Capsella rubella Carub.0006s2993 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 scaffold_6 + View
Capsella rubella Carub.0004s2904 K16240 - protein suppressor of PHYA-105 1 (SPA1) scaffold_4 - View
Cucumis sativus L. CsaV3_5G002160 protein SPA1-RELATED 2 chr5 + View
Daucus carota DCAR_006863 hypothetical protein DCARv2_Chr2 - View
Daucus carota DCAR_008540 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv43896 GWHABJS00000016 - View
Davidia involucrata Dinv37553 GWHABJS00000017 + View
Davidia involucrata Dinv38862 GWHABJS00000003 + View
Durio zibethinus Duzib084G0870 NW_019167827.1 - View
Durio zibethinus Duzib068G0020 NW_019167838.1 - View
Durio zibethinus Duzib205G0698 NW_019168381.1 - View
Erigeron canadensis ECA240G3643 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.D01772 Chr04 + View
Erythranthe guttata Migut.E01232 scaffold_5 - View
Eutrema salsugineum Thhalv10028383m.g PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 scaffold_3 - View
Eutrema salsugineum Thhalv10001291m.g K16240 - protein suppressor of PHYA-105 1 (SPA1) scaffold_22 - View
Fragaria x ananassa FAN13G0669 PTHR22847//PTHR22847:SF443 - WD40 REPEAT PROTEIN // PROTEIN SPA1-RELATED 2 Fvb5-2 - View
Fragaria x ananassa FAN06G2569 K16240 - protein suppressor of PHYA-105 1 (SPA1) Fvb7-2 - View
Fragaria x ananassa FAN10G2995 KOG0316//KOG0641//KOG0643//KOG1332 - Conserved WD40 repeat-containing protein // WD40 repeat protein // Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) // Vesicle coat complex COPII, subunit SEC13 Fvb7-1 - View
Fragaria x ananassa FAN04G1449 KOG0296//KOG0316 - Angio-associated migratory cell protein (contains WD40 repeats) // Conserved WD40 repeat-containing protein Fvb5-4 - View
Fragaria x ananassa FAN18G0037 KOG0279//KOG0315//KOG0316//KOG0641 - G protein beta subunit-like protein // G-protein beta subunit-like protein (contains WD40 repeats) // Conserved WD40 repeat-containing protein // WD40 repeat protein Fvb5-1 - View
Fragaria x ananassa FAN10G4145 KOG0316//KOG0641//KOG0643//KOG1332 - Conserved WD40 repeat-containing protein // WD40 repeat protein // Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) // Vesicle coat complex COPII, subunit SEC13 Fvb7-1 - View
Fragaria x ananassa FAN08G3185 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 Fvb5-3 + View
Fragaria vesca FvH4_7g15970 K16240 - protein suppressor of PHYA-105 1 (SPA1) Fvb7 - View
Fragaria vesca FvH4_5g04010 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 Fvb5 - View
Gossypium hirsutum Gohir.D12G235900 K16240 - protein suppressor of PHYA-105 1 (SPA1) D12 - View
Gossypium hirsutum Gohir.D11G100100 K16240 - protein suppressor of PHYA-105 1 (SPA1) D11 - View
Gossypium hirsutum Gohir.A12G234800 K16240 - protein suppressor of PHYA-105 1 (SPA1) A12 - View
Gossypium hirsutum Gohir.A11G095100 K16240 - protein suppressor of PHYA-105 1 (SPA1) A11 - View
Glycine max Glyma.11G018700 KOG0283//KOG0315//KOG0641//KOG0647//KOG1446 - WD40 repeat-containing protein // G-protein beta subunit-like protein (contains WD40 repeats) // WD40 repeat protein // mRNA export protein (contains WD40 repeats) // Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 Gm11 + View
Glycine max Glyma.05G214900 K16240 - protein suppressor of PHYA-105 1 (SPA1) Gm05 - View
Glycine max Glyma.16G027200 K16240 - protein suppressor of PHYA-105 1 (SPA1) Gm16 + View
Glycine max Glyma.01G224200 K16240 - protein suppressor of PHYA-105 1 (SPA1) Gm01 - View
Glycine max Glyma.08G021200 KOG1033 - eIF-2alpha kinase PEK/EIF2AK3 Gm08 - View
Glycine max Glyma.07G058200 K16240 - protein suppressor of PHYA-105 1 (SPA1) Gm07 + View
Gossypium raimondii Gorai.008G252600 Chr08 - View
Gossypium raimondii Gorai.007G106300 Chr07 - View
Lupinus albus Lalb_Chr05g0224261 KOG1033 - eIF-2alpha kinase PEK/EIF2AK3 Lalb_Chr05 + View
Lupinus albus Lalb_Chr16g0390531 KOG0279//KOG0288//KOG0316//KOG1446 - G protein beta subunit-like protein // WD40 repeat protein TipD // Conserved WD40 repeat-containing protein // Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 Lalb_Chr16 - View
Lotus japonicus LjContig00312_ERROPOS870357g0004768 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 Contig00312_ERROPOS870357 + View
Lonicera japonica Lj8C211T0 GWHAAZE00000008 + View
Lonicera japonica Lj9C592T5 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_6_85840 KOG0316//KOG1332 - Conserved WD40 repeat-containing protein // Vesicle coat complex COPII, subunit SEC13 Lsat_1_v8_lg_6 + View
Lactuca sativa Lsat_1_v5_gn_3_10081 Lsat_1_v8_lg_3 - View
Magnolia biondii MBI07_g20446_MAGBIO AED:0.15 Chr07 - View
Magnolia biondii MBI06_g22399_MAGBIO AED:0.08 Chr06 - View
Malus domestica MD01G1076400 SPA (suppressor of phyA-105) protein family Chr01 - View
Malus domestica MD14G1121100 SPA1-related 2 Chr14 - View
Malus domestica MD07G1145300 SPA (suppressor of phyA-105) protein family Chr07 - View
Malus domestica MD06G1101400 SPA1-related 2 Chr06 - View
Manihot esculenta Manes.01G248600 Chromosome01 + View
Medicago truncatula Medtr5g009530 ubiquitin ligase cop1, putative chr5 + View
Nelumbo nucifera Nn3g19084 chr3 + View
Nicotiana tabacum Nitab4.5_0000223g0130 WD40 repeat, conserved site, Protein kinase-like domain, Protein kinase domain, WD40 repeat, WD40/YVTN repeat-like-containing domain, WD40-repeat-containing domain, Serine/threonine- / dual specificity protein kinase, catalytic domain Nitab4.5_0000223 - View
Nicotiana tabacum Nitab4.5_0004161g0060 WD40/YVTN repeat-like-containing domain, WD40 repeat, WD40-repeat-containing domain, WD40 repeat, conserved site, Protein kinase-like domain Nitab4.5_0004161 + View
Olea europaea Oeu046820.2 chr8 - View
Petunia axillaris Peaxi162Scf00074g01219 Ubiquitin ligase protein cop1, putative isoform 6 Peaxi162Scf00074 + View
Punica granatum PGR031G2212 NC_045127.1 - View
Prunus persica Prupe.2G183800 Pp02 - View
Prunus persica Prupe.5G114800 Pp05 - View
Pisum sativum Psat2g185080 G protein beta WD-40 repeat signature chr2LG1 - View
Papaver somniferum PSO384G4892 NC_039368.1 + View
Populus trichocarpa Potri.014G095300 K16240 - protein suppressor of PHYA-105 1 (SPA1) Chr14 - View
Populus trichocarpa Potri.003G137100 KOG1033 - eIF-2alpha kinase PEK/EIF2AK3 Chr03 - View
Populus trichocarpa Potri.001G094500 K16240 - protein suppressor of PHYA-105 1 (SPA1) Chr01 + View
Phaseolus vulgaris Phvul.002G296004 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 Chr02 - View
Phaseolus vulgaris Phvul.002G162800 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 Chr02 - View
Quercus lobata QL02p031492 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr7g0195501 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim02G0240800 chr02 - View
Salvia bowleyana SalBow8G3076 GWHASIU00000004 + View
Salix brachista Sabra01G0070600 GWHAAZH00000001 + View
Salix brachista Sabra03G0098600 GWHAAZH00000003 - View
Simmondsia chinensis Sc22g0005190 GWHAASQ00000022 + View
Simmondsia chinensis Sc23g0002250 GWHAASQ00000023 + View
Sechium edule Sed0013567 LG01 + View
Sechium edule Sed0012661 LG05 + View
Sapria himalayana SHI07021 scaffold4_21100006 + View
Solanum lycopersicum Solyc10g011690.3 protein SPA1-RELATED 2-like (AHRD V3.3 *** A0A2I4HSY6_9ROSI) SL4.0ch10 + View
Solanum lycopersicum Solyc08g081990.3 protein SPA1-RELATED 2-like (AHRD V3.3 *** A0A2I4DQ28_9ROSI) SL4.0ch08 - View
Schrenkiella parvula Sp6g06310 PTHR22847:SF443 - PROTEIN SPA1-RELATED 2 ch6-1 - View
Schrenkiella parvula Sp4g28380 K16240 - protein suppressor of PHYA-105 1 (SPA1) ch4-6 - View
Solanum pennellii Sopen08g030290 Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | SPA1-related 2 (SPA2) | FUNCTIONS IN: protein binding, signal transducer activity | INVOLVED IN: protein amino acid phosphorylation | LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat 2 , WD40 repeat, conserved site , WD40 repeat , Serine/threonine-protein kinase-like domain , Protein kinase-like domain , G-protein beta WD-40 repeat, region , WD40 repeat-like-containing domain , Protein kinase, catalytic domain , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: SPA (suppressor of phyA-105) protein family Spenn-ch08 - View
Solanum tuberosum PGSC0003DMG400012163 Ubiquitin ligase protein cop1 ST4.03ch08 - View
Solanum tuberosum PGSC0003DMG400019379 Ubiquitin ligase protein cop1 ST4.03ch10 + View
Selenicereus undatus Hund11408 Scaffold_10417 + View
Trochodendron aralioides TAR375G1095 group15 - View
Trochodendron aralioides TAR374G0912 group12 - View
Theobroma cacao Thecc.03G292700 Ubiquitin ligase protein cop1 Chromosome_3 - View
Theobroma cacao Thecc.01G346900 SPA family protein Chromosome_1 + View
Tarenaya hassleriana THA.LOC104802058 protein SUPPRESSOR OF PHYA-105 1-like NW_010970490.1 - View
Tarenaya hassleriana THA.LOC104814910 protein SPA1-RELATED 2 NW_010960187.1 - View
Trifolium pratense TPR.G6705 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI15G1098 NC_052247.1 + View
Tripterygium wilfordii TWI60G0969 NC_052246.1 + View
Vaccinium macrocarpon vmacro11446 Similar to SPA2: Protein SPA1-RELATED 2 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G2133 CM024074.1 + View
Vigna mungo VMungo0251G1858 CM024069.1 - View
Vitis vinifera GSVIVG01027054001 chr15 + View
Vitis vinifera GSVIVG01019492001 chr2 - View