Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G9550 LG-2 - View
Actinidia chinensis Actinidia05611 Lachesis_group20 - View
Actinidia chinensis Actinidia01898 Lachesis_group0 - View
Arabidopsis lyrata AL2G15400 scaffold_2 - View
Amaranthus hybridus Ah.09g235750 AmaHy_arrow1_Scaffold_9 + View
Arabidopsis thaliana AT1G61040 plus-3 domain-containing protein Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family. vernalization independence 5 (VIP5)%3B FUNCTIONS IN: DNA binding%3B INVOLVED IN: positive regulation of transcription%2C DNA-dependent%2C negative regulation of flower development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Plus-3 domain%2C subgroup (InterPro:IPR018144)%2C Plus-3 (InterPro:IPR004343)%3B Has 7244 Blast hits to 3723 proteins in 490 species: Archae - 2%3B Bacteria - 3364%3B Metazoa - 2087%3B Fungi - 627%3B Plants - 250%3B Viruses - 32%3B Other Eukaryotes - 882 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB04g20309 ChrB04 + View
Brassica carinata BcaC06g31829 ChrC06 + View
Brassica carinata BcaC02g10594 ChrC02 - View
Brassica napus C01p37700 C01 + View
Brassica napus A01p29850 A01 + View
Brassica oleracea BolC1t03734H C1 + View
Beta vulgaris EL10Ac8g20336 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Chr8_EL10_PGA_scaffold4 - View
Camellia sinensis var. sinensis CSS0028072 PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sesamum indicum] Chr8 - View
Camellia sinensis var. sinensis CSS0027200 PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sesamum indicum] Chr8 + View
Capsicum annuum CAN.G1627.16 PGAv.1.6.scaffold1627 + View
Cannabis sativa CANSAT35G0257 NC_044378.1 - View
Corylus avellana Haze_06507 Similar to VIP5: Protein RTF1 homolog (Arabidopsis thaliana OX%3D3702) 2 + View
Coffea canephora Cc02_g12930 plus-3 domain-containing protein chr2 - View
Carya illinoinensis CiPaw.10G046600 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Chr10 - View
Corchorus olitorius COL.COLO4_31510 Plus-3 AWUE01020856.1 + View
Carica papaya Cpa.g.sc27.76 supercontig_27 + View
Chenopodium quinoa AUR62014784 VIP5: Protein RTF1 homolog C_Quinoa_Scaffold_2947 - View
Chenopodium quinoa AUR62016972 VIP5: Protein RTF1 homolog C_Quinoa_Scaffold_3787 - View
Capsella rubella Carub.0002s0416 K15178 - RNA polymerase-associated protein RTF1 (RTF1) scaffold_2 - View
Daucus carota DCAR_008049 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_004097 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv07531 GWHABJS00000020 + View
Durio zibethinus Duzib160G0164 NW_019168015.1 + View
Durio zibethinus Duzib235G1026 NW_019167982.1 + View
Eucalyptus grandis Eucgr.E03353 Chr05 + View
Erythranthe guttata Migut.M01180 scaffold_13 - View
Fragaria x ananassa FAN16G2290 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Fvb3-3 - View
Fragaria x ananassa FAN25G1603 KOG2402 - Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) Fvb3-1 + View
Fragaria x ananassa FAN21G0113 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Fvb3-2 + View
Fragaria vesca FvH4_3g04783 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Fvb3 - View
Gossypium hirsutum Gohir.A10G023800 K15178 - RNA polymerase-associated protein RTF1 (RTF1) A10 - View
Gossypium hirsutum Gohir.D10G024500 K15178 - RNA polymerase-associated protein RTF1 (RTF1) D10 - View
Glycine max Glyma.13G182500 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Gm13 + View
Glycine max Glyma.07G194200 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Gm07 - View
Gossypium raimondii Gorai.011G025800 Chr11 - View
Hydrangea macrophylla Hma1.2p1_0126F.1_g059170 Hma1.2p1_0126F.1 - View
Lupinus albus Lalb_Chr16g0383591 KOG2402 - Paf1/RNA polymerase II complex, RTF1 component (involved in regulation of TATA box-binding protein) Lalb_Chr16 - View
Lupinus albus Lalb_Chr05g0218341 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Lalb_Chr05 - View
Lotus japonicus Lj4g0023106 K15178 - RNA polymerase-associated protein RTF1 (RTF1) chr4 + View
Malus domestica MD05G1317500 plus-3 domain-containing protein Chr05 + View
Medicago truncatula Medtr4g089070 RNA polymerase-associated RTF1-like protein chr4 + View
Nicotiana tabacum Nitab4.5_0003668g0110 Plus-3, Plus-3 domain, subgroup Nitab4.5_0003668 - View
Olea europaea Oeu016117.1 chr10 + View
Olea europaea Oeu050830.1 chr19 + View
Punica granatum PGR042G1300 NC_045130.1 + View
Pisum sativum Psat7g112160 Plus-3 domain chr7LG7 - View
Populus trichocarpa Potri.011G047900 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Chr11 - View
Populus trichocarpa Potri.004G039500 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Chr04 - View
Phaseolus vulgaris Phvul.002G226300 K15178 - RNA polymerase-associated protein RTF1 (RTF1) Chr02 - View
Quercus lobata QL05p039342 5 - View
Rosa chinensis RcHm_v2.0_Chr5g0007801 RcHm_v2.0_Chr5 - View
Rhododendron simsii RhsimUnG0044100 ctg121 - View
Rhododendron simsii Rhsim02G0125200 chr02 + View
Striga asiatica SGA_v2.0_scaffold100G29640 scaffold100 + View
Striga asiatica SGA_v2.0_scaffold49G18283 scaffold49 + View
Salvia bowleyana SalBow8G3648 GWHASIU00000004 + View
Salix brachista Sabra04G0024300 GWHAAZH00000004 - View
Salix brachista Sabra11G0033300 GWHAAZH00000011 - View
Simmondsia chinensis Sc05g0007850 GWHAASQ00000005 + View
Solanum lycopersicum Solyc02g078580.1 RNA polymerase-associated protein RTF1 (AHRD V3.3 *** A0A2K3PFZ0_TRIPR) SL4.0ch02 + View
Schrenkiella parvula Sp2g03480 K15178 - RNA polymerase-associated protein RTF1 (RTF1) ch2-2 - View
Solanum pennellii Sopen02g023440 Encodes a yeast Paf1C subunit homolog required for the expression of the MADS box gene FLC and other members of the FLC/MAF MADS-box gene family. | vernalization independence 5 (VIP5) | FUNCTIONS IN: DNA binding | INVOLVED IN: positive regulation of transcription, DNA-dependent, negative regulation of flower development | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup , Plus-3 Spenn-ch02 + View
Solanum tuberosum PGSC0003DMG400022434 RNA polymerase-associated protein RTF1 ST4.03ch02 + View
Trochodendron aralioides TAR629G2996 group0 - View
Trochodendron aralioides TAR627G0572 group6 + View
Theobroma cacao Thecc.06G191600 PAF1 complex component Chromosome_6 + View
Trifolium pratense TPR.G12063 Tp57577_TGAC_v2_LG3 + View
Vigna mungo VMungo0251G3484 CM024069.1 - View
Vitis vinifera GSVIVG01006453001 chrUn + View