Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G500 LG-10 + View
Acer truncatum Atru.chr2.3845 chr2 - View
Actinidia chinensis Actinidia03660 Lachesis_group9 + View
Actinidia chinensis Actinidia30365 Lachesis_group10 + View
Actinidia chinensis Actinidia10583 Lachesis_group19 - View
Actinidia chinensis Actinidia00836 Lachesis_group15 - View
Avicennia marina MSTRG.14512 ScioBoG_18782_HRSCAF_18867 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SQBY3A K12616 - enhancer of mRNA-decapping protein 4 (EDC4) arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ADA7T8 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) arahy.Tifrunner.gnm1.Arahy.11 - View
Amborella trichopoda ATR0751G014 AmTr_v1.0_scaffold00061 - View
Beta vulgaris EL10Ac4g07507 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr4_EL10_PGA_scaffold1 - View
Camellia sinensis var. sinensis CSS0030826 PREDICTED: enhancer of mRNA-decapping protein 4-like [Sesamum indicum] Chr7 - View
Cannabis sativa CANSAT11G0621 NC_044377.1 - View
Cicer arietinum L. Ca_14851_v3 Ca_LG5_v3 + View
Corylus avellana Haze_09897 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc05_g15500 Transducin/WD40 repeat-like superfamily protein chr5 + View
Citrus clementina Ciclev10007261m.g scaffold_1 + View
Ceratophyllum demersum CDE10G0783 8 - View
Carpinus fangiana Cfa016942 Cfa07 + View
Cardamine hirsuta CARHR087910 Enhancer of mRNA-decapping protein 4 Chr3 + View
Carya illinoinensis CiPaw.12G141800 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr12 + View
Citrullus lanatus ClCG10G004140 Enhancer of mRNA-decapping protein CG_Chr10 + View
Corchorus olitorius COL.COLO4_07762 hypothetical protein AWUE01013456.1 + View
Carica papaya Cpa.g.sc12.90 supercontig_12 - View
Chenopodium quinoa AUR62035638 VCS: Enhancer of mRNA-decapping protein 4 C_Quinoa_Scaffold_3991 - View
Chenopodium quinoa AUR62017166 VCS: Enhancer of mRNA-decapping protein 4 C_Quinoa_Scaffold_3787 + View
Daucus carota DCAR_013771 hypothetical protein DCARv2_Chr4 + View
Daucus carota DCAR_017598 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv10376 GWHABJS00000001 + View
Davidia involucrata Dinv40896 GWHABJS00000013 - View
Durio zibethinus Duzib268G1004 NW_019168270.1 - View
Durio zibethinus Duzib170G0551 NW_019167871.1 - View
Durio zibethinus Duzib213G0425 NW_019167993.1 - View
Erigeron canadensis ECA240G3156 Conyza_canadensis_scaffold:5 + View
Eucalyptus grandis Eucgr.F02007 Chr06 - View
Erythranthe guttata Migut.H01726 scaffold_8 - View
Fragaria x ananassa FAN11G3885 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Fvb3-4 - View
Fragaria x ananassa FAN25G1930 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Fvb3-1 + View
Fragaria x ananassa FAN21G1841 Fvb3-2 + View
Fragaria x ananassa FAN16G1749 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Fvb3-3 - View
Fragaria vesca FvH4_3g41972 Fvb3 - View
Glycine max Glyma.18G072400 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Gm18 - View
Glycine max Glyma.08G337200 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Gm08 - View
Helianthus annuus HanXRQChr11g0334581 Putative WD40/YVTN repeat-like-containing domain; Enhancer of mRNA-decapping protein 4, WD40 repeat region HanXRQChr11 - View
Hydrangea macrophylla Hma1.2p1_0193F.1_g084140 Hma1.2p1_0193F.1 + View
Lupinus albus Lalb_Chr20g0115301 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Lalb_Chr20 + View
Lotus japonicus Lj6g0010416 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) chr6 - View
Lonicera japonica Lj1A897T44 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_7_116441 Lsat_1_v8_lg_7 - View
Lactuca sativa Lsat_1_v5_gn_9_89380 Lsat_1_v8_lg_9 - View
Magnolia biondii MBI15_g35676_MAGBIO AED:0.20 Chr15 - View
Malus domestica MD03G1039800 Transducin/WD40 repeat-like superfamily protein Chr03 + View
Malus domestica MD11G1041300 Transducin/WD40 repeat-like superfamily protein Chr11 + View
Manihot esculenta Manes.05G206100 Chromosome05 - View
Manihot esculenta Manes.01G005000 Chromosome01 + View
Medicago truncatula Medtr3g061160 enhancer of mRNA-decapping-like protein chr3 + View
Nelumbo nucifera Nn1g07691 chr1 - View
Nicotiana tabacum Nitab4.5_0001622g0060 WD40-repeat-containing domain, WD40 repeat, WD40/YVTN repeat-like-containing domain Nitab4.5_0001622 + View
Nicotiana tabacum Nitab4.5_0000152g0190 WD40-repeat-containing domain, WD40 repeat, WD40/YVTN repeat-like-containing domain Nitab4.5_0000152 - View
Nicotiana tabacum Nitab4.5_0001303g0100 WD40 repeat, WD40-repeat-containing domain, WD40/YVTN repeat-like-containing domain Nitab4.5_0001303 - View
Olea europaea Oeu019693.1 scaffold1839 - View
Petunia axillaris Peaxi162Scf00232g00036 Transducin/WD40 repeat-like superfamily protein Peaxi162Scf00232 + View
Punica granatum PGR083G0485 NC_045133.1 - View
Prunus persica Prupe.6G032100 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Pp06 + View
Papaver somniferum PSO675G0267 NC_039358.1 - View
Papaver somniferum PSO541G5418 NC_039363.1 + View
Populus trichocarpa Potri.016G002100 PF16529 - WD40 region of Ge1, enhancer of mRNA-decapping protein (Ge1_WD40) Chr16 - View
Populus trichocarpa Potri.011G166400 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr11 + View
Populus trichocarpa Potri.001G469500 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr01 + View
Phaseolus vulgaris Phvul.006G060500 K12616 - enhancer of mRNA-decapping protein 4 (EDC4) Chr06 + View
Quercus lobata QL08p001531 8 - View
Quercus lobata QL05p066377 5 - View
Rosa chinensis RcHm_v2.0_Chr5g0075171 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim06G0234000 chr06 + View
Rhododendron simsii Rhsim04G0009400 chr04 - View
Striga asiatica SGA_v2.0_scaffold42G15938 scaffold42 - View
Salvia bowleyana SalBow8G5543 GWHASIU00000004 + View
Salix brachista Sabra16G0318400 GWHAAZH00000016 + View
Salix brachista Sabra16G0007100 GWHAAZH00000016 + View
Simmondsia chinensis Sc20g0000100 GWHAASQ00000020 - View
Sechium edule Sed0006897 LG03 + View
Solanum lycopersicum Solyc10g005920.4 enhancer of mRNA-decapping protein 4-like (AHRD V3.3 *** A0A2I4F2H1_9ROSI) SL4.0ch10 + View
Solanum lycopersicum Solyc07g065950.4 enhancer of mRNA-decapping protein 4-like (AHRD V3.3 *-* A0A2I4F2H1_9ROSI) SL4.0ch07 + View
Solanum pennellii Sopen07g034150 Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | VARICOSE (VCS) | FUNCTIONS IN: protein homodimerization activity, nucleotide binding | INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis | LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body | EXPRESSED IN: whole plant, guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: varicose-related Spenn-ch07 + View
Solanum pennellii Sopen10g001880 Encodes VCS (VARICOSE). Involved in mRNA decapping. VCS forms a mRNA decapping complex with DCP1 (At1g08370) and DCP2 (At5g13570). Unlike DCP2, VCS itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. VCS is also required for leaf development. | VARICOSE (VCS) | FUNCTIONS IN: protein homodimerization activity, nucleotide binding | INVOLVED IN: mRNA catabolic process, deadenylation-independent decapping of nuclear-transcribed mRNA, leaf morphogenesis | LOCATED IN: cytosol, nucleus, cytoplasmic mRNA processing body | EXPRESSED IN: whole plant, guard cell, cultured cell | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , WD40 repeat 2 , WD40-repeat-containing domain , WD40/YVTN repeat-like-containing domain , WD40 repeat , WD40 repeat, subgroup | BEST Arabidopsis thaliana protein match is: varicose-related Spenn-ch10 + View
Trochodendron aralioides TAR629G2148 group0 - View
Trochodendron aralioides TAR626G0018 group3 - View
Trochodendron aralioides TAR627G0307 group6 + View
Theobroma cacao Thecc.07G005200 Transducin/WD40 repeat-like superfamily protein Chromosome_7 - View
Tarenaya hassleriana THA.LOC104822709 enhancer of mRNA-decapping protein 4-like isoform X1 NW_010966725.1 - View
Tarenaya hassleriana THA.LOC104815682 enhancer of mRNA-decapping protein 4-like NW_010965696.1 - View
Trifolium pratense TPR.G17949 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI39G0122 NC_052250.1 - View
Tripterygium wilfordii TWI38G1429 NC_052252.1 + View
Vaccinium macrocarpon vmacro09608 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro11629 Similar to VCS: Enhancer of mRNA-decapping protein 4 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0540G1408 CM024075.1 - View