Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0017088 PREDICTED: probable CCR4-associated factor 1 homolog 7 [Vitis vinifera] Contig1058 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G500 LG-7 + View
Aethionema arabicum Aa31LG4G1050 LG-4 + View
Acer truncatum Atru.chr7.2528 chr7 - View
Actinidia chinensis Actinidia36881 Lachesis_group9 + View
Actinidia chinensis Actinidia25456 Lachesis_group1 - View
Arabidopsis lyrata AL1G28080 scaffold_1 + View
Avicennia marina MSTRG.9406 ScioBoG_12795_HRSCAF_12848 + View
Avicennia marina MSTRG.4687 ScioBoG_102837_HRSCAF_103074 + View
Avicennia marina MSTRG.22792 ScioBoG_3703_HRSCAF_3719 - View
Amaranthus hybridus Ah.01g006870 Probable CCR4-associated factor 1 homolog 7 (EC 3.1.13.4) AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy7G03453 CHR07 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.NG6XH8 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.7PY2EE K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) arahy.Tifrunner.gnm1.Arahy.19 + View
Arabidopsis thaliana AT1G15920 Polynucleotidyl transferase, ribonuclease H-like superfamily protein Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 915 Blast hits to 901 proteins in 224 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 151%3B Plants - 388%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink). Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT2G32070.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB02g06639 ChrB02 + View
Brassica carinata BcaC05g25611 ChrC05 + View
Brassica carinata BcaC07g41465 ChrC07 - View
Brassica carinata BcaB05g25228 ChrB05 - View
Brassica carinata BcaC08g47544 ChrC08 - View
Brassica carinata BcaC03g15930 ChrC03 - View
Brassica napus C06p53690 C06 - View
Brassica napus C05p14150 C05 + View
Brassica napus C02p36920 C02 - View
Brassica napus A02p23150 A02 - View
Brassica napus A07p44880 A07 - View
Brassica napus A06p11950 A06 + View
Brassica oleracea BolC6t40386H C6 - View
Brassica oleracea BolC5t30146H C5 + View
Brassica rapa BraA06t24365Z A06 + View
Brassica rapa BraA07t31995Z A07 - View
Brassica rapa BraA02t07313Z A02 - View
Beta vulgaris EL10Ac2g04132 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Chr2_EL10_PGA_scaffold6 + View
Beta vulgaris EL10Ac9g22218 PTHR10797//PTHR10797:SF0 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // POP2, ISOFORM D Chr9_EL10_PGA_scaffold8 + View
Capsicum annuum CAN.G1490.8 PGAv.1.6.scaffold1490 + View
Capsicum annuum CAN.G407.55 PGAv.1.6.scaffold407 - View
Cannabis sativa CANSAT56G2127 NC_044371.1 + View
Cicer arietinum L. Ca_20550_v3 Ca_LG6_v3 + View
Corylus avellana Haze_21434 Similar to CAF1-7: Probable CCR4-associated factor 1 homolog 7 (Arabidopsis thaliana OX%3D3702) 3 + View
Coffea canephora Cc04_g05010 Probable CCR4-associated factor 1 homolog 7 chr4 - View
Citrus clementina Ciclev10026260m.g scaffold_7 - View
Citrus clementina Ciclev10008276m.g scaffold_1 + View
Carpinus fangiana Cfa013076 Cfa05 + View
Cardamine hirsuta CARHR073700 CCR4-NOT transcription complex subunit 7 Chr2 - View
Cardamine hirsuta CARHR016430 CCR4-NOT transcription complex subunit 7 Chr1 + View
Carya illinoinensis CiPaw.01G253900 3.1.13.4 - Poly(A)-specific ribonuclease Chr01 - View
Carya illinoinensis CiPaw.15G174400 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Chr15 - View
Carya illinoinensis CiPaw.08G007000 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Chr08 + View
Carya illinoinensis CiPaw.02G161500 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Chr02 - View
Citrullus lanatus ClCG08G013650 CCR4-NOT transcription complex subunit 7 CG_Chr08 - View
Cucumis melo MELO3C011292.2 Ribonuclease CAF1 chr03 + View
Carica papaya Cpa.g.sc127.17 supercontig_127 - View
Chenopodium quinoa AUR62030830 CAF1-7: Probable CCR4-associated factor 1 homolog 7 C_Quinoa_Scaffold_2587 - View
Chenopodium quinoa AUR62031590 CAF1-7: Probable CCR4-associated factor 1 homolog 7 C_Quinoa_Scaffold_1206 - View
Chenopodium quinoa AUR62012464 CAF1-7: Probable CCR4-associated factor 1 homolog 7 C_Quinoa_Scaffold_1995 - View
Capsella rubella Carub.0002s2676 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) scaffold_2 - View
Capsella rubella Carub.0001s1572 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) scaffold_1 + View
Cucumis sativus L. CsaV3_2G032410 CCR4-NOT transcription complex subunit 7 chr2 - View
Daucus carota DCAR_021365 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv42880 GWHABJS00000085 + View
Davidia involucrata Dinv43220 GWHABJS00000085 - View
Davidia involucrata Dinv21402 GWHABJS00000006 + View
Davidia involucrata Dinv23293 GWHABJS00000019 + View
Durio zibethinus Duzib192G0785 NW_019168037.1 + View
Erigeron canadensis ECA247G1789 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA232G3110 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.F03953 Chr06 - View
Eucalyptus grandis Eucgr.C01670 Chr03 - View
Eucalyptus grandis Eucgr.J03104 Chr10 - View
Erythranthe guttata Migut.I00704 scaffold_9 - View
Erythranthe guttata Migut.D01109 scaffold_4 - View
Eutrema salsugineum Thhalv10008404m.g K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) scaffold_5 - View
Fragaria x ananassa FAN02G2514 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Fvb6-4 - View
Fragaria x ananassa FAN27G1529 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Fvb2-1 - View
Fragaria x ananassa FAN14G3613 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Fvb6-1 + View
Fragaria x ananassa FAN09G3061 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Fvb6-2 + View
Fragaria vesca FvH4_6g28750 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Fvb6 - View
Fragaria vesca FvH4_2g40930 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Fvb2 - View
Gossypium hirsutum Gohir.D05G060100 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) D05 - View
Gossypium hirsutum Gohir.A05G058100 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) A05 - View
Glycine max Glyma.07G024000 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Gm07 + View
Glycine max Glyma.08G217600 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Gm08 - View
Glycine max Glyma.06G063300 PTHR10797//PTHR10797:SF14 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED Gm06 + View
Gossypium raimondii Gorai.009G061200 Chr09 - View
Helianthus annuus HanXRQChr16g0499651 Probable polynucleotidyl transferase, ribonuclease H-like superfamily protein HanXRQChr16 - View
Hydrangea macrophylla Hma1.2p1_0135F.1_g061850 Hma1.2p1_0135F.1 - View
Lupinus albus Lalb_Chr25g0278931 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lalb_Chr25 + View
Lupinus albus Lalb_Chr01g0012101 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lalb_Chr01 + View
Lupinus albus Lalb_Chr04g0264401 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lalb_Chr04 - View
Lotus japonicus Lj3g0006321 PTHR10797:SF0 - POP2, ISOFORM D chr3 - View
Lonicera japonica Lj9P494T24 GWHAAZE00000009 + View
Lonicera japonica Lj5C79T15 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_6_19540 Lsat_1_v8_lg_6 + View
Lactuca sativa Lsat_1_v5_gn_4_87021 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_1_32101 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lsat_1_v8_lg_1 + View
Malus domestica MD15G1038000 Polynucleotidyl transferase Chr15 - View
Malus domestica MD02G1009600 Polynucleotidyl transferase Chr02 + View
Malus domestica MD08G1058500 Polynucleotidyl transferase Chr08 + View
Manihot esculenta Manes.16G128000 Chromosome16 - View
Manihot esculenta Manes.11G060300 Chromosome11 + View
Manihot esculenta Manes.04G103700 Chromosome04 - View
Nelumbo nucifera Nn8g39820 chr8 - View
Nelumbo nucifera Nn2g12317 chr2 - View
Nicotiana tabacum Nitab4.5_0001454g0150 Ribonuclease CAF1, Ribonuclease H-like domain Nitab4.5_0001454 - View
Nicotiana tabacum Nitab4.5_0000373g0310 Ribonuclease H-like domain, Ribonuclease CAF1 Nitab4.5_0000373 - View
Olea europaea Oeu009790.1 scaffold1371 - View
Petunia axillaris Peaxi162Scf00332g00444 Polynucleotidyl transferase, ribonuclease H-like superfamily protein Peaxi162Scf00332 - View
Punica granatum PGR102G0218 NC_045129.1 - View
Punica granatum PGR102G3284 NC_045129.1 - View
Prunus persica Prupe.1G391900 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Pp01 - View
Prunus persica Prupe.3G097100 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Pp03 + View
Pisum sativum Psat7g259520 CAF1 family ribonuclease chr7LG7 + View
Populus trichocarpa Potri.018G020900 PTHR10797//PTHR10797:SF14 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED Chr18 + View
Populus trichocarpa Potri.003G181100 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Chr03 + View
Populus trichocarpa Potri.006G262500 PTHR10797//PTHR10797:SF14 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED Chr06 - View
Phaseolus vulgaris Phvul.010G160400 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Chr10 - View
Quercus lobata QL02p019628 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr2g0133151 RcHm_v2.0_Chr2 - View
Rosa chinensis RcHm_v2.0_Chr6g0299631 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim12G0187800 chr12 + View
Rhododendron simsii Rhsim08G0207500 chr08 + View
Striga asiatica SGA_v2.0_scaffold5G02774 scaffold5 - View
Salvia bowleyana SalBow6G2744 GWHASIU00000002 - View
Salix brachista Sabra01G0032300 GWHAAZH00000001 - View
Salix brachista Sabra03G0132600 GWHAAZH00000003 + View
Salix brachista Sabra06G0204700 GWHAAZH00000006 - View
Sechium edule Sed0021721 LG11 + View
Sechium edule Sed0017925 LG03 - View
Solanum lycopersicum Solyc06g068410.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (AHRD V3.3 *** F4HU15_ARATH) SL4.0ch06 - View
Solanum lycopersicum Solyc03g117030.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (AHRD V3.3 *** F4HU15_ARATH) SL4.0ch03 + View
Schrenkiella parvula Sp5g34960 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) ch5-7 - View
Schrenkiella parvula Sp1g14230 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) ch1-1 + View
Solanum pennellii Sopen06g025670 Polynucleotidyl transferase, ribonuclease H-like superfamily protein | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: RNA modification | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein Spenn-ch06 - View
Solanum pennellii Sopen03g035930 Polynucleotidyl transferase, ribonuclease H-like superfamily protein | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: RNA modification | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400028497 Ccr4-associated factor ST4.03ch06 - View
Solanum tuberosum PGSC0003DMG400014121 Ccr4-associated factor ST4.03ch03 + View
Selenicereus undatus Hund03463 Scaffold_19641 + View
Trochodendron aralioides TAR626G1610 group3 - View
Trochodendron aralioides TAR383G0164 group10 + View
Trochodendron aralioides TAR636G3619 group1 + View
Theobroma cacao Thecc.06G039900 Polynucleotidyl transferase Chromosome_6 - View
Tarenaya hassleriana THA.LOC104808180 probable CCR4-associated factor 1 homolog 7 NW_010964598.1 - View
Tarenaya hassleriana THA.LOC104812432 probable CCR4-associated factor 1 homolog 7 NW_010965372.1 - View
Trifolium pratense TPR.G3104 Tp57577_TGAC_v2_LG7 - View
Trifolium pratense TPR.G38780 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI18G1147 NC_052241.1 + View
Tripterygium wilfordii TWI34G1743 NC_052235.1 + View
Tripterygium wilfordii TWI12G0982 NC_052243.1 - View
Utricularia gibba unitig_62.g23825 unitig_62 + View
Vaccinium macrocarpon vmacro19045 Similar to CAF1-7: Probable CCR4-associated factor 1 homolog 7 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0331G1370 CM024078.1 + View
Vigna mungo VMungo1309G1665 CM024072.1 - View
Vanilla planifolia HPP92_010428 Polynucleotidyl transferase, ribonuclease H-like superfamily protein *** CM028154.1 + View
Vitis vinifera GSVIVG01034221001 chr9 + View