Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G6390 LG-4 + View
Acer truncatum Atru.chr13.140 chr13 + View
Actinidia chinensis Actinidia15494 Lachesis_group26 - View
Actinidia chinensis Actinidia17044 Lachesis_group28 - View
Actinidia chinensis Actinidia37920 Lachesis_group7 - View
Actinidia chinensis Actinidia28603 Lachesis_group27 - View
Arabidopsis lyrata AL1G33520 scaffold_1 + View
Arabidopsis lyrata AL2G36390 scaffold_2 + View
Amaranthus hybridus Ah.01g023690 Small nuclear ribonucleoprotein SmD3b (SmD3-b) (snRNP core protein D3-b) AmaHy_arrow1_Scaffold_1 + View
Aquilegia oxysepala Aqoxy5G01037 CHR05 - View
Arabidopsis thaliana AT1G20580 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1)%3B Has 1253 Blast hits to 1253 proteins in 229 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 480%3B Fungi - 336%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 214 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 (SmD3)%3B FUNCTIONS IN: molecular_function unknown%3B LOCATED IN: nuclear body%2C nucleolus%2C nucleus%2C small nucleolar ribonucleoprotein complex%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G20580.1)%3B Has 1247 Blast hits to 1247 proteins in 231 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 471%3B Fungi - 341%3B Plants - 223%3B Viruses - 0%3B Other Eukaryotes - 210 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR0661G400 AmTr_v1.0_scaffold00001 - View
Brassica carinata BcaB03g12863 ChrB03 - View
Brassica carinata BcaB07g32057 ChrB07 + View
Brassica carinata BcaC08g47129 ChrC08 + View
Brassica carinata BcaC07g39041 ChrC07 + View
Brassica carinata BcaC08g47267 ChrC08 - View
Brassica carinata BcaC05g25964 ChrC05 + View
Brassica napus A07p15600 A07 - View
Brassica napus A07p41890 A07 + View
Brassica napus C07p22950 C07 - View
Brassica napus C06p50320 C06 + View
Brassica napus C05p19150 C05 + View
Brassica napus C08p20220 C08 + View
Brassica napus A06p16580 A06 + View
Brassica oleracea BolC7t42834H C7 - View
Brassica oleracea BolC6t40069H C6 + View
Brassica oleracea BolC5t30615H C5 + View
Brassica oleracea BolC8t49651H C8 + View
Brassica rapa BraA07t29299Z A07 - View
Brassica rapa BraA07t31719Z A07 + View
Brassica rapa BraA06t24765Z A06 + View
Beta vulgaris EL10Ac9g21252 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Chr9_EL10_PGA_scaffold8 - View
Cannabis sativa CANSAT25G0152 NC_044370.1 - View
Corylus avellana Haze_22786 Similar to SMD3B: Small nuclear ribonucleoprotein SmD3b (Arabidopsis thaliana OX%3D3702) 3 + View
Citrus clementina Ciclev10002830m.g scaffold_5 + View
Ceratophyllum demersum CDE05G3019 3 - View
Ceratophyllum demersum CDE05G1714 3 + View
Carpinus fangiana Cfa014085 Cfa05 + View
Cardamine hirsuta CARHR021050 Small nuclear ribonucleoprotein, putative Chr1 + View
Cardamine hirsuta CARHR069850 Small nuclear ribonucleoprotein, putative Chr2 + View
Carya illinoinensis CiPaw.08G073600 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Chr08 + View
Carya illinoinensis CiPaw.07G138300 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Chr07 - View
Citrullus lanatus ClCG11G018690 Small nuclear ribonucleoprotein D3 CG_Chr11 + View
Cucumis melo MELO3C017020.2 Small nuclear ribonucleoprotein chr07 - View
Corchorus olitorius COL.COLO4_05221 hypothetical protein AWUE01012272.1 + View
Capsella rubella Carub.0001s2007 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) scaffold_1 + View
Capsella rubella Carub.0002s2319 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) scaffold_2 + View
Cucumis sativus L. CsaV3_4G037220 Small nuclear ribonucleoprotein Sm D3 chr4 + View
Daucus carota DCAR_009533 hypothetical protein DCARv2_Chr3 + View
Daucus carota DCAR_013917 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv31947 GWHABJS00000002 + View
Davidia involucrata Dinv05529 GWHABJS00000011 + View
Davidia involucrata Dinv41881 GWHABJS00000002 + View
Durio zibethinus Duzib041G0259 NW_019167826.1 - View
Durio zibethinus Duzib116G0833 NW_019167949.1 - View
Durio zibethinus Duzib093G1878 NW_019167937.1 + View
Erigeron canadensis ECA233G2472 Conyza_canadensis_scaffold:1 + View
Eutrema salsugineum Thhalv10019312m.g K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) scaffold_9 - View
Eutrema salsugineum Thhalv10009078m.g K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) scaffold_5 - View
Fragaria x ananassa FAN15G2035 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Fvb2-4 - View
Fragaria x ananassa FAN20G2728 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Fvb2-3 - View
Fragaria x ananassa FAN27G0967 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Fvb2-1 + View
Fragaria vesca FvH4_2g37310 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Fvb2 + View
Gossypium hirsutum Gohir.A02G084600 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) A02 + View
Gossypium hirsutum Gohir.A05G179300 KOG3482 - Small nuclear ribonucleoprotein (snRNP) SMF A05 - View
Gossypium hirsutum Gohir.D05G182500 KOG3172 - Small nuclear ribonucleoprotein Sm D3 D05 - View
Gossypium hirsutum Gohir.A01G105400 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) A01 - View
Gossypium hirsutum Gohir.D01G091700 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) D01 - View
Gossypium hirsutum Gohir.D02G100500 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) D02 + View
Gossypium raimondii Gorai.009G187800 Chr09 - View
Gossypium raimondii Gorai.002G116800 Chr02 - View
Gossypium raimondii Gorai.005G113900 Chr05 + View
Hydrangea macrophylla Hma1.2p1_0507F.1_g168560 Hma1.2p1_0507F.1 + View
Hydrangea macrophylla Hma1.2p1_1100F.1_g256990 Hma1.2p1_1100F.1 - View
Lupinus albus Lalb_Chr23g0265771 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Lalb_Chr23 - View
Lupinus albus Lalb_Chr11g0061601 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Lalb_Chr11 - View
Lupinus albus Lalb_Chr08g0246401 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Lalb_Chr08 + View
Lonicera japonica Lj4A805T23 GWHAAZE00000004 + View
Lonicera japonica Lj4A10T83 GWHAAZE00000004 - View
Lactuca sativa Lsat_1_v5_gn_8_26300 Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_2_4001 Lsat_1_v8_lg_2 - View
Malus domestica MD08G1002200 Small nuclear ribonucleoprotein family protein Chr08 - View
Malus domestica MD15G1001300 Small nuclear ribonucleoprotein family protein Chr15 - View
Manihot esculenta Manes.18G004900 Chromosome18 - View
Manihot esculenta Manes.05G133600 Chromosome05 - View
Nelumbo nucifera Nn6g31729 chr6 - View
Nelumbo nucifera Nn5g30951 chr5 + View
Punica granatum PGR031G0751 NC_045127.1 + View
Prunus persica Prupe.1G353900 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Pp01 - View
Papaver somniferum PSO675G2974 NC_039358.1 + View
Papaver somniferum PSO541G6151 NC_039363.1 + View
Populus trichocarpa Potri.005G251100 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Chr05 + View
Populus trichocarpa Potri.002G010200 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) Chr02 - View
Quercus lobata QL02p014285 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr6g0304391 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim07G0255000 chr07 + View
Rhododendron simsii Rhsim06G0006800 chr06 - View
Salix brachista Sabra02G0007600 GWHAAZH00000002 - View
Salix brachista Sabra05G0194200 GWHAAZH00000005 + View
Sechium edule Sed0005519 LG01 - View
Sechium edule Sed0009612 LG13 + View
Schrenkiella parvula Sp5g31440 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) ch5-7 + View
Schrenkiella parvula Sp1g18290 K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) ch1-1 + View
Selenicereus undatus Hund00358 Scaffold_33678 + View
Trochodendron aralioides TAR381G1070 group11 - View
Trochodendron aralioides TAR628G0460 group5 + View
Theobroma cacao Thecc.08G059700 Small nuclear ribonucleoprotein family protein Chromosome_8 + View
Tarenaya hassleriana THA.LOC104809773 small nuclear ribonucleoprotein SmD3b NW_010960187.1 + View
Tarenaya hassleriana THA.LOC104811465 small nuclear ribonucleoprotein SmD3b-like NW_010965372.1 + View
Tripterygium wilfordii TWI56G1280 NC_052242.1 + View
Tripterygium wilfordii TWI12G0703 NC_052243.1 - View
Tripterygium wilfordii TWI36G0363 NC_052237.1 + View
Vaccinium macrocarpon vmacro21807 Similar to SMD3B: Small nuclear ribonucleoprotein SmD3b (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro04406 Similar to SMD3B: Small nuclear ribonucleoprotein SmD3b (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01013364001 chr18 - View