Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0045349 hypothetical protein Csa_4G309150 [Cucumis sativus] Chr4 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr12.22 chr12 + View
Acer truncatum Atru.chr8.2229 chr8 + View
Actinidia chinensis Actinidia29106 Lachesis_group3 - View
Actinidia chinensis Actinidia20730 Lachesis_group0 - View
Actinidia chinensis Actinidia05368 Lachesis_group20 - View
Actinidia chinensis Actinidia11595 Lachesis_group21 - View
Arabidopsis lyrata AL5G32370 scaffold_5 - View
Avicennia marina MSTRG.5580 ScioBoG_102839_HRSCAF_103093 - View
Avicennia marina MSTRG.19015 ScioBoG_25048_HRSCAF_25167 - View
Aquilegia oxysepala Aqoxy4G02598 CHR04 - View
Aquilegia oxysepala Aqoxy2G00915 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J62Q7G K10802 - high mobility group protein B1 (HMGB1) arahy.Tifrunner.gnm1.Arahy.04 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.78GQMD PTHR13711:SF187 - HIGH MOBILITY GROUP B PROTEIN 1 arahy.Tifrunner.gnm1.Arahy.14 + View
Arabidopsis thaliana AT3G51880 high mobility group B1 Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif%2C the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells%2C HMGB1 is found throughout the nucleus%2C whereas in mitotic cells it is not chromatin-associated. high mobility group B1 (HMGB1)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: cytosol%2C chromatin%2C nuclear chromatin%2C nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3)%3B Has 22052 Blast hits to 13496 proteins in 725 species: Archae - 26%3B Bacteria - 633%3B Metazoa - 9857%3B Fungi - 2534%3B Plants - 1397%3B Viruses - 386%3B Other Eukaryotes - 7219 (source: NCBI BLink). high mobility group B1 (HMGB1)%3B FUNCTIONS IN: chromatin binding%2C structural constituent of chromatin%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: chromatin assembly or disassembly%3B LOCATED IN: cytosol%2C chromatin%2C nuclear chromatin%2C nucleus%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%3B BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3)%3B Has 22052 Blast hits to 13496 proteins in 726 species: Archae - 26%3B Bacteria - 633%3B Metazoa - 9856%3B Fungi - 2535%3B Plants - 1397%3B Viruses - 386%3B Other Eukaryotes - 7219 (source: NCBI BLink). Chr3 - View
Amborella trichopoda ATR0618G150 AmTr_v1.0_scaffold00029 + View
Capsicum annuum CAN.G5.28 PGAv.1.6.scaffold5 - View
Cannabis sativa CANSAT35G0903 NC_044378.1 - View
Cicer arietinum L. Ca_07631_v3 Ca_LG3_v3 + View
Corylus avellana Haze_20996 Similar to HMGB1: High mobility group B protein 1 (Arabidopsis thaliana OX%3D3702) 10 + View
Corylus avellana Haze_17217 Similar to HMGB1: High mobility group B protein 1 (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc06_g01450 High mobility group B protein 1 chr6 - View
Citrus clementina Ciclev10012868m.g scaffold_6 + View
Citrus clementina Ciclev10032930m.g scaffold_4 + View
Carpinus fangiana Cfa017213 Cfa07 - View
Carpinus fangiana Cfa001327 Cfa01 - View
Cardamine hirsuta CARHR161510 High mobility group protein B1 Chr5 - View
Carya illinoinensis CiPaw.10G156100 K10802 - high mobility group protein B1 (HMGB1) Chr10 + View
Carya illinoinensis CiPaw.02G191800 K10802 - high mobility group protein B1 (HMGB1) Chr02 + View
Corchorus olitorius COL.COLO4_14544 hypothetical protein AWUE01015434.1 - View
Carica papaya Cpa.g.sc11.167 supercontig_11 - View
Carica papaya Cpa.g.sc19.183 supercontig_19 - View
Capsella rubella Carub.0005s1823 PTHR13711:SF187 - HIGH MOBILITY GROUP B PROTEIN 1 scaffold_5 - View
Daucus carota DCAR_018706 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv17983 GWHABJS00000004 + View
Davidia involucrata Dinv23097 GWHABJS00000015 + View
Durio zibethinus Duzib114G0948 NW_019167926.1 - View
Durio zibethinus Duzib106G1496 NW_019168492.1 + View
Durio zibethinus Duzib093G2247 NW_019167937.1 + View
Erigeron canadensis ECA247G2462 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.A00506 Chr01 + View
Erythranthe guttata Migut.J00179 scaffold_10 - View
Eutrema salsugineum Thhalv10010751m.g K10802 - high mobility group protein B1 (HMGB1) scaffold_16 + View
Fragaria x ananassa FAN02G0049 K10802 - high mobility group protein B1 (HMGB1) Fvb6-4 - View
Fragaria x ananassa FAN06G2531 K10802 - high mobility group protein B1 (HMGB1) Fvb7-2 - View
Fragaria x ananassa FAN10G3038 PTHR13711:SF187 - HIGH MOBILITY GROUP B PROTEIN 1 Fvb7-1 + View
Fragaria x ananassa FAN14G4731 K10802 - high mobility group protein B1 (HMGB1) Fvb6-1 + View
Fragaria x ananassa FAN09G4298 PTHR13711//PTHR13711:SF187 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 1 Fvb6-2 + View
Fragaria x ananassa FAN05G0296 K10802 - high mobility group protein B1 (HMGB1) Fvb6-3 - View
Fragaria x ananassa FAN01G2349 K10802 - high mobility group protein B1 (HMGB1) Fvb7-4 - View
Fragaria x ananassa FAN14G4982 K10802 - high mobility group protein B1 (HMGB1) Fvb6-1 + View
Fragaria vesca FvH4_7g24360 K10802 - high mobility group protein B1 (HMGB1) Fvb7 + View
Fragaria vesca FvH4_6g11530 K10802 - high mobility group protein B1 (HMGB1) Fvb6 - View
Gossypium hirsutum Gohir.A09G164700 K10802 - high mobility group protein B1 (HMGB1) A09 + View
Gossypium hirsutum Gohir.D09G160300 PTHR13711:SF187 - HIGH MOBILITY GROUP B PROTEIN 1 D09 + View
Gossypium hirsutum Gohir.A01G227700 K10802 - high mobility group protein B1 (HMGB1) A01 - View
Gossypium hirsutum Gohir.D01G217500 K10802 - high mobility group protein B1 (HMGB1) D01 - View
Glycine max Glyma.01G116000 K10802 - high mobility group protein B1 (HMGB1) Gm01 + View
Gossypium raimondii Gorai.002G263800 Chr02 - View
Gossypium raimondii Gorai.006G181900 Chr06 + View
Lupinus albus Lalb_Chr19g0124671 PTHR13711//PTHR13711:SF187 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 1 Lalb_Chr19 + View
Lotus japonicus Lj1g0014439 PTHR13711//PTHR13711:SF187 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 1 chr1 - View
Lonicera japonica Lj3C954T14 GWHAAZE00000003 - View
Lonicera japonica Lj2C76T27 GWHAAZE00000002 - View
Magnolia biondii MBI14_g31687_MAGBIO AED:0.05 Chr14 + View
Malus domestica MD01G1132900 high mobility group B1 Chr01 + View
Malus domestica MD07G1220600 high mobility group B1 Chr07 + View
Manihot esculenta Manes.07G128600 Chromosome07 + View
Manihot esculenta Manes.08G091800 Chromosome08 + View
Medicago truncatula Medtr7g068280 high mobility group (HMG)-box protein chr7 + View
Nelumbo nucifera Nn2g13692 chr2 + View
Nelumbo nucifera Nn2g11467 chr2 + View
Petunia axillaris Peaxi162Scf00141g00216 Unknown protein Peaxi162Scf00141 - View
Punica granatum PGR004G1812 NC_045131.1 - View
Prunus persica Prupe.2G249000 K10802 - high mobility group protein B1 (HMGB1) Pp02 + View
Prunus persica Prupe.6G276300 K10802 - high mobility group protein B1 (HMGB1) Pp06 + View
Pisum sativum Psat3g129760 HMG (high mobility group) box chr3LG5 + View
Papaver somniferum PSO801G0185 NW_020628818.1 - View
Papaver somniferum PSO339G3526 NC_039366.1 - View
Populus trichocarpa Potri.008G067400 K10802 - high mobility group protein B1 (HMGB1) Chr08 + View
Populus trichocarpa Potri.010G189900 K10802 - high mobility group protein B1 (HMGB1) Chr10 - View
Phaseolus vulgaris Phvul.010G001800 Chr10 + View
Rosa chinensis RcHm_v2.0_Chr3g0463231 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim05G0214100 chr05 + View
Striga asiatica SGA_v2.0_scaffold85G26745 scaffold85 - View
Salvia bowleyana SalBow5G0590 GWHASIU00000003 - View
Salix brachista Sabra08G0049500 GWHAAZH00000008 + View
Simmondsia chinensis Sc22g0002460 GWHAASQ00000022 - View
Sechium edule Sed0014872 LG14 - View
Solanum lycopersicum Solyc09g014620.3 High mobility group protein (AHRD V3.3 *-* Q4ZH67_CUCSA) SL4.0ch09 + View
Schrenkiella parvula Sp5g10390 K10802 - high mobility group protein B1 (HMGB1) ch5-1 + View
Solanum pennellii Sopen09g007460 hypothetical protein Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400008501 HMG-protein ST4.03ch09 - View
Trochodendron aralioides TAR369G0911 group18 - View
Trochodendron aralioides TAR633G2673 group2 + View
Trochodendron aralioides TAR623G0383 group7 + View
Trochodendron aralioides TAR636G2383 group1 - View
Theobroma cacao Thecc.10G020300 High mobility group B1 Chromosome_10 - View
Theobroma cacao Thecc.05G017100 High mobility group B1 Chromosome_5 - View
Tarenaya hassleriana THA.LOC104805851 high mobility group B protein 1 NW_010960187.1 + View
Trifolium pratense TPR.G8143 Tp57577_TGAC_v2_scaf_282 + View
Tripterygium wilfordii TWI53G1408 NC_052244.1 + View
Tripterygium wilfordii TWI77G0823 NC_052236.1 + View
Vaccinium macrocarpon vmacro20257 Similar to HMGB1: High mobility group B protein 1 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G1659 CM024078.1 - View
Vitis vinifera GSVIVG01032840001 chr13 + View
Vitis vinifera GSVIVG01033966001 chr8 + View