Gene: AT3G51880
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G51880
- Transcript Identifier AT3G51880.3
- Gene Type Coding gene
- Location Chr3 : 19247241-19248491 : negative
Gene Family Information
- ID HOM05D000727
- #Genes/#Species 800/97
- Phylogenetic origin
- ID ORTHO05D000541
- #Genes/#Species 799/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G51880.3
- symbol HMGB1
- Alias AtHMGB1,NFD1,NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1
- uniprot O49595
Descriptions
- Description high mobility group B1
- Computational description high mobility group B1 (HMGB1); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: cytosol, chromatin, nuclear chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 22052 Blast hits to 13496 proteins in 725 species: Archae - 26; Bacteria - 633; Metazoa - 9857; Fungi - 2534; Plants - 1397; Viruses - 386; Other Eukaryotes - 7219 (source: NCBI BLink).
- Computational description high mobility group B1 (HMGB1); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: cytosol, chromatin, nuclear chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 22052 Blast hits to 13496 proteins in 726 species: Archae - 26; Bacteria - 633; Metazoa - 9856; Fungi - 2535; Plants - 1397; Viruses - 386; Other Eukaryotes - 7219 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006333 | TAS | Gene Ontology | chromatin assembly or disassembly | 1 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 2 |
| GO:0003682 | TAS | Gene Ontology | chromatin binding | 1 |
| GO:0030527 | TAS | Gene Ontology | structural constituent of chromatin | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IDA ISS | Gene Ontology | DNA binding | 3 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 5 |
| GO:0000785 | IDA TAS | Gene Ontology | chromatin | 1 5 |
| GO:0005829 | IDA | Gene Ontology | cytosol | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.3.1 | Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B) |