Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0028817 replication factor C 36 kDA family protein [Populus trichocarpa] Chr9 + View
CSS0043529 replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] Contig697 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G7480 LG-4 - View
Aethionema arabicum Aa31LG7G5660 LG-7 + View
Acer truncatum Atru.chr13.1511 chr13 + View
Actinidia chinensis Actinidia03460 Lachesis_group27 - View
Actinidia chinensis Actinidia29478 Lachesis_group7 - View
Arabidopsis lyrata AL2G37670 scaffold_2 - View
Avicennia marina MSTRG.25372 ScioBoG_4119_HRSCAF_4138 - View
Amaranthus hybridus Ah.05g170940 Replication factor C subunit 3 (OsRFC3) (Activator 1 subunit 3) AmaHy_arrow1_Scaffold_5 - View
Aquilegia oxysepala Aqoxy6G00254 CHR06 + View
Arabidopsis thaliana AT1G21690 ATPase family associated with various cellular activities (AAA) embryo defective 1968 (EMB1968)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: embryo development ending in seed dormancy%3B LOCATED IN: DNA replication factor C complex%2C nucleolus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Replication factor C (InterPro:IPR013748)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%3B BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1)%3B Has 18128 Blast hits to 18077 proteins in 2897 species: Archae - 631%3B Bacteria - 10254%3B Metazoa - 847%3B Fungi - 935%3B Plants - 386%3B Viruses - 88%3B Other Eukaryotes - 4987 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G77470 replication factor C subunit 3 Encodes a protein with high homology to the Replication Factor C%2C Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent. replication factor C subunit 3 (RFC3)%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: negative regulation of defense response%3B LOCATED IN: DNA replication factor C complex%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C Replication factor C (InterPro:IPR013748)%2C DNA polymerase III%2C clamp loader complex%2C gamma/delta/delta subunit%2C C-terminal (InterPro:IPR008921)%3B BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1)%3B Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637%3B Bacteria - 9895%3B Metazoa - 902%3B Fungi - 991%3B Plants - 392%3B Viruses - 88%3B Other Eukaryotes - 4679 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaB07g32165 ChrB07 + View
Brassica carinata BcaC03g15740 ChrC03 - View
Brassica carinata BcaB05g25051 ChrB05 - View
Brassica napus C02p34610 C02 - View
Brassica napus C05p20660 C05 + View
Brassica napus A06p17770 A06 + View
Brassica napus C06p31240 C06 + View
Brassica napus A02p21300 A02 - View
Brassica oleracea BolC5t30765H C5 + View
Brassica oleracea BolC2t09486H C2 - View
Brassica rapa BraA06t24869Z A06 + View
Beta vulgaris EL10Ac1g01041 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Chr1_EL10_PGA_scaffold3 + View
Cannabis sativa CANSAT25G1662 NC_044370.1 + View
Cicer arietinum L. Ca_16563_v3 Ca_LG5_v3 - View
Corylus avellana Haze_17510 Similar to RFC3: Replication factor C subunit 3 (Oryza sativa subsp. japonica OX%3D39947) 7 + View
Coffea canephora Cc10_g12180 Replication factor C subunit 5 chr10 + View
Citrus clementina Ciclev10001597m.g scaffold_5 + View
Cardamine hirsuta CARHR070990 replication factor C subunit 3 Chr2 - View
Cardamine hirsuta CARHR022040 Replication factor C subunit 2/4 Chr1 + View
Citrullus lanatus ClCG08G005860 Replication factor C subunit CG_Chr08 + View
Cucumis melo MELO3C010631.2 replication factor C subunit 5 chr03 - View
Carica papaya Cpa.g.sc64.112 supercontig_64 + View
Chenopodium quinoa AUR62019054 RFC3: Replication factor C subunit 3 C_Quinoa_Scaffold_3876 - View
Chenopodium quinoa AUR62014313 RFC3: Replication factor C subunit 3 C_Quinoa_Scaffold_1566 - View
Capsella rubella Carub.0001s2112 PTHR11669//PTHR11669:SF17 - REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT // REPLICATION FACTOR C SUBUNIT 4 scaffold_1 + View
Capsella rubella Carub.0002s2436 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 scaffold_2 - View
Cucumis sativus L. CsaV3_6G034260 replication factor C subunit 5 chr6 - View
Davidia involucrata Dinv27288 GWHABJS00000002 + View
Durio zibethinus Duzib093G1303 NW_019167937.1 + View
Durio zibethinus Duzib116G0621 NW_019167949.1 + View
Erythranthe guttata Migut.C01109 scaffold_3 + View
Eutrema salsugineum Thhalv10018756m.g PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 scaffold_9 + View
Fragaria x ananassa FAN20G1865 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Fvb2-3 + View
Fragaria x ananassa FAN15G1146 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Fvb2-4 + View
Fragaria vesca FvH4_2g27410 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Fvb2 + View
Gossypium hirsutum Gohir.A05G236800 KOG0990 - Replication factor C, subunit RFC5 A05 + View
Gossypium hirsutum Gohir.D05G238900 KOG0990 - Replication factor C, subunit RFC5 D05 + View
Glycine max Glyma.06G114100 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Gm06 - View
Gossypium raimondii Gorai.009G247600 Chr09 + View
Hydrangea macrophylla Hma1.2p1_0129F.1_g060420 Hma1.2p1_0129F.1 + View
Hydrangea macrophylla Hma1.2p1_0054F.1_g031130 Hma1.2p1_0054F.1 + View
Lupinus albus Lalb_Chr11g0065951 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Lalb_Chr11 - View
Lonicera japonica Lj4A633G16 GWHAAZE00000004 + View
Malus domestica MD00G1028800 replication factor C subunit 3 Chr00 - View
Manihot esculenta Manes.18G079501 Chromosome18 + View
Medicago truncatula Medtr3g088120 replication factor C subunit 5 chr3 - View
Nelumbo nucifera Nn5g28359 chr5 - View
Nicotiana tabacum Nitab4.5_0000322g0050 ATPase, AAA-type, core, Replication factor C, C-terminal domain, DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal, AAA+ ATPase domain, P-loop containing nucleoside triphosphate hydrolase Nitab4.5_0000322 + View
Olea europaea Oeu001535.1 chr23 + View
Petunia axillaris Peaxi162Scf00051g01416 replication factor C subunit 3 Peaxi162Scf00051 - View
Papaver somniferum PSO170G0410 NC_039360.1 - View
Populus trichocarpa Potri.005G180001 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Chr05 + View
Phaseolus vulgaris Phvul.009G126000 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 Chr09 - View
Quercus lobata QL09p033191 9 + View
Rosa chinensis RcHm_v2.0_Chr6g0296261 RcHm_v2.0_Chr6 + View
Rhododendron simsii Rhsim11G0069700 chr11 + View
Striga asiatica SGA_v2.0_scaffold24G10439 scaffold24 - View
Salvia bowleyana SalBow7G0673 GWHASIU00000005 - View
Salvia bowleyana SalBow7G2997 GWHASIU00000005 - View
Salix brachista Sabra02G0063600 GWHAAZH00000002 - View
Simmondsia chinensis Sc02g0005030 GWHAASQ00000002 - View
Sechium edule Sed0023365 LG03 + View
Solanum lycopersicum Solyc06g060150.3 Replication factor C subunit 5 (AHRD V3.3 *** A0A2G3C770_CAPCH) SL4.0ch06 + View
Schrenkiella parvula Sp1g19230 PTHR11669:SF17 - REPLICATION FACTOR C SUBUNIT 4 ch1-1 + View
Schrenkiella parvula Sp5g32630 PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 ch5-7 - View
Solanum pennellii Sopen06g020270 Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent. | replication factor C subunit 3 (RFC3) | FUNCTIONS IN: in 6 functions | INVOLVED IN: negative regulation of defense response | LOCATED IN: DNA replication factor C complex | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core , ATPase, AAA-type, core , Replication factor C , DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal | BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) Spenn-ch06 + View
Selenicereus undatus Hund17307 Scaffold_33675 + View
Selenicereus undatus Hund26791 Scaffold_2055 + View
Trochodendron aralioides TAR628G0775 group5 - View
Trochodendron aralioides TAR376G0409 group14 - View
Trochodendron aralioides TAR381G1563 group11 + View
Theobroma cacao Thecc.08G128800 Chromosome_8 + View
Tarenaya hassleriana THA.LOC104800207 replication factor C subunit 5 NW_010969032.1 + View
Tripterygium wilfordii TWI32G1289 NC_052254.1 + View
Vaccinium macrocarpon vmacro00847 Similar to RFC5: Replication factor C subunit 5 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G0926 CM024072.1 - View