Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Acer truncatum | Atru.chr13.1986 | chr13 | + | View | |
Actinidia chinensis | Actinidia17765 | Lachesis_group26 | + | View | |
Arabidopsis lyrata | AL6G43350 | scaffold_6 | + | View | |
Avicennia marina | MSTRG.24490 | ScioBoG_4088_HRSCAF_4107 | + | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.QL8U34 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | arahy.Tifrunner.gnm1.Arahy.15 | - | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.HEZ0TZ | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | arahy.Tifrunner.gnm1.Arahy.05 | - | View |
Arabidopsis thaliana | AT4G09730 | RH39 Encodes RH39%2C a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1%2C5-bisphosphate carboxylase/oxygenase. RH39 (RH39)%3B FUNCTIONS IN: LSU rRNA binding%2C ATPase activity%2C ATP-dependent helicase activity%3B INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis%2C chloroplast rRNA processing%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA helicase%2C DEAD-box type%2C Q motif (InterPro:IPR014014)%2C DNA/RNA helicase%2C DEAD/DEAH box type%2C N-terminal (InterPro:IPR011545)%2C DEAD-like helicase%2C N-terminal (InterPro:IPR014001)%2C DNA/RNA helicase%2C C-terminal (InterPro:IPR001650)%2C Helicase%2C superfamily 1/2%2C ATP-binding domain (InterPro:IPR014021)%3B BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G06980.1)%3B Has 40425 Blast hits to 39698 proteins in 3032 species: Archae - 675%3B Bacteria - 19989%3B Metazoa - 5933%3B Fungi - 4498%3B Plants - 2407%3B Viruses - 9%3B Other Eukaryotes - 6914 (source: NCBI BLink). | Chr4 | + | View |
Beta vulgaris | EL10Ac1g01622 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Chr1_EL10_PGA_scaffold3 | - | View |
Cannabis sativa | CANSAT25G1247 | NC_044370.1 | + | View | |
Corylus avellana | Haze_17822 | Similar to RH39: DEAD-box ATP-dependent RNA helicase 39 (Arabidopsis thaliana OX%3D3702) | 7 | - | View |
Coffea canephora | Cc10_g06460 | DEAD-box ATP-dependent RNA helicase 39 | chr10 | + | View |
Citrus clementina | Ciclev10000567m.g | scaffold_5 | - | View | |
Carpinus fangiana | Cfa018266 | Cfa07 | + | View | |
Cardamine hirsuta | CARHR260710 | ATP-dependent RNA helicase | Chr8 | + | View |
Carya illinoinensis | CiPaw.16G007700 | PF00270//PF00658 - DEAD/DEAH box helicase (DEAD) // Poly-adenylate binding protein, unique domain (PABP) | Chr16 | + | View |
Citrullus lanatus | ClCG08G007240 | ATP-dependent RNA helicase | CG_Chr08 | + | View |
Cucumis melo | MELO3C019967.2 | DEAD-box ATP-dependent RNA helicase 39-like | chr03 | - | View |
Carica papaya | Cpa.g.sc26.115 | supercontig_26 | - | View | |
Chenopodium quinoa | AUR62026620 | Os01g0184500: DEAD-box ATP-dependent RNA helicase 39 | C_Quinoa_Scaffold_2081 | + | View |
Chenopodium quinoa | AUR62034909 | Os01g0184500: DEAD-box ATP-dependent RNA helicase 39 | C_Quinoa_Scaffold_3617 | - | View |
Capsella rubella | Carub.0006s2820 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | scaffold_6 | + | View |
Cucumis sativus L. | CsaV3_6G004910 | DEAD-box ATP-dependent RNA helicase 39-like | chr6 | + | View |
Daucus carota | DCAR_001196 | hypothetical protein | DCARv2_Chr1 | - | View |
Davidia involucrata | Dinv41025 | GWHABJS00000002 | - | View | |
Durio zibethinus | Duzib093G0808 | NW_019167937.1 | - | View | |
Durio zibethinus | Duzib041G0379 | NW_019167826.1 | - | View | |
Erigeron canadensis | ECA246G1482 | Conyza_canadensis_scaffold:8 | - | View | |
Eucalyptus grandis | Eucgr.F02677 | Chr06 | + | View | |
Erythranthe guttata | Migut.N02946 | scaffold_14 | + | View | |
Eutrema salsugineum | Thhalv10028511m.g | PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | scaffold_3 | - | View |
Fragaria x ananassa | FAN27G1745 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Fvb2-1 | + | View |
Fragaria x ananassa | FAN20G1039 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Fvb2-3 | - | View |
Fragaria x ananassa | FAN24G2730 | PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Fvb2-2 | - | View |
Fragaria x ananassa | FAN15G2479 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Fvb2-4 | + | View |
Fragaria vesca | FvH4_2g12870 | PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Fvb2 | + | View |
Glycine max | Glyma.16G160900 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Gm16 | + | View |
Glycine max | Glyma.02G077700 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Gm02 | + | View |
Gossypium raimondii | Gorai.010G134100 | Chr10 | - | View | |
Lotus japonicus | Lj2g0014148 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | chr2 | - | View |
Lactuca sativa | Lsat_1_v5_gn_6_100040 | PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Lsat_1_v8_lg_6 | - | View |
Malus domestica | MD10G1037800 | RH39 | Chr10 | - | View |
Malus domestica | MD05G1035500 | RH39 | Chr05 | - | View |
Manihot esculenta | Manes.02G184400 | Chromosome02 | - | View | |
Nicotiana tabacum | Nitab4.5_0000872g0170 | Helicase, superfamily 1/2, ATP-binding domain, RNA helicase, DEAD-box type, Q motif, Helicase, C-terminal, P-loop containing nucleoside triphosphate hydrolase, DNA/RNA helicase, DEAD/DEAH box type, N-terminal | Nitab4.5_0000872 | - | View |
Olea europaea | Oeu061450.1 | chr7 | - | View | |
Petunia axillaris | Peaxi162Scf00160g01756 | DEAD-box ATP-dependent RNA helicase 39 | Peaxi162Scf00160 | + | View |
Punica granatum | PGR042G3566 | NC_045130.1 | + | View | |
Prunus persica | Prupe.8G043300 | PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Pp08 | - | View |
Papaver somniferum | PSO170G0822 | NC_039360.1 | - | View | |
Papaver somniferum | PSO210G4221 | NC_039359.1 | - | View | |
Populus trichocarpa | Potri.005G198300 | PTHR24031//PTHR24031:SF247 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | Chr05 | - | View |
Quercus lobata | QL02p036546 | CM012294 | + | View | |
Rosa chinensis | RcHm_v2.0_Chr6g0273971 | RcHm_v2.0_Chr6 | + | View | |
Rhododendron simsii | Rhsim06G0092900 | chr06 | - | View | |
Salvia bowleyana | SalBow6G5316 | GWHASIU00000002 | - | View | |
Salix brachista | Sabra05G0151000 | GWHAAZH00000005 | - | View | |
Sechium edule | Sed0023237 | LG03 | - | View | |
Sapria himalayana | SHI09105 | scaffold9_16683904 | - | View | |
Solanum lycopersicum | Solyc12g056740.2 | RNA helicase DEAD39 | SL4.0ch12 | - | View |
Schrenkiella parvula | Sp6g07880 | PTHR24031:SF247 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 | ch6-2 | - | View |
Solanum pennellii | Sopen12g029410 | Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase. | RH39 (RH39) | FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity | INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing | LOCATED IN: chloroplast | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein | Spenn-ch12 | - | View |
Solanum tuberosum | PGSC0003DMG400023195 | DEAD-box ATP-dependent RNA helicase 39 | ST4.03ch12 | - | View |
Selenicereus undatus | Hund26675 | Scaffold_2055 | + | View | |
Trochodendron aralioides | TAR628G1513 | group5 | - | View | |
Theobroma cacao | Thecc.08G162500 | DEAD-box ATP-dependent RNA helicase 39 | Chromosome_8 | - | View |
Tarenaya hassleriana | THA.LOC104809749 | DEAD-box ATP-dependent RNA helicase 39-like | NW_010965051.1 | + | View |
Tarenaya hassleriana | THA.LOC104806769 | DEAD-box ATP-dependent RNA helicase 39 | NW_010962392.1 | - | View |
Tripterygium wilfordii | TWI34G1590 | NC_052235.1 | - | View | |
Tripterygium wilfordii | TWI32G0937 | NC_052254.1 | - | View | |
Vigna mungo | VMungo0464G0575 | CM024077.1 | - | View | |
Vitis vinifera | GSVIVG01013702001 | chr18_random | + | View |