Gene: AT4G09730
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G09730
- Transcript Identifier AT4G09730.1
- Gene Type Coding gene
- Location Chr4 : 6136333-6139510 : positive
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004353
- #Genes/#Species 183/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G09730.1
- uniprot Q56X76
Descriptions
- Description RH39
- Computational description RH39 (RH39); FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity; INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G06980.1); Has 40425 Blast hits to 39698 proteins in 3032 species: Archae - 675; Bacteria - 19989; Metazoa - 5933; Fungi - 4498; Plants - 2407; Viruses - 9; Other Eukaryotes - 6914 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc12g056740.2 |
GO:1902775 | IBA | Gene Ontology | mitochondrial large ribosomal subunit assembly | 1 |
GO:1901259 | IMP | Gene Ontology | chloroplast rRNA processing | 2 |
GO:0110102 | IMP | Gene Ontology | ribulose bisphosphate carboxylase complex assembly | 2 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005524 | IEA | GOA Database | ATP binding | |
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0003676 | IEA | GOA Database | nucleic acid binding | |
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0004386 | IEA | GOA Database | helicase activity | |
GO:0000166 | IEA | GOA Database | nucleotide binding | |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0003723 | IEA | GOA Database | RNA binding | |
GO:0003724 | IEA | Gene Ontology | RNA helicase activity | |
GO:0003729 | IDA | Gene Ontology | mRNA binding | 3 |
GO:0070180 | IDA | Gene Ontology | large ribosomal subunit rRNA binding | 2 |
GO:0016887 | IDA | Gene Ontology | ATP hydrolysis activity | 2 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0009507 | IDA | GOA Database | chloroplast | |
GO:0009507 | IMP, HDA | Gene Ontology | chloroplast | 2 4 |
GO:0005739 | IBA | Gene Ontology | mitochondrion | 1 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |