Gene: Sopen12g029410

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g029410
  • Transcript Identifier Sopen12g029410.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 78654090-78660170 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g029410.1

Descriptions

  • Description Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase. | RH39 (RH39) | FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity | INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing | LOCATED IN: chloroplast | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc12g056740.2
GO:0110102
ISO
PLAZA Integrative Orthologyribulose bisphosphate carboxylase complex assembly AT4G09730
GO:1901259
ISO
PLAZA Integrative Orthologychloroplast rRNA processing AT4G09730

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0016887
ISO
PLAZA Integrative OrthologyATP hydrolysis activity AT4G09730
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc12g056740.2
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G09730
GO:0070180
ISO
PLAZA Integrative Orthologylarge ribosomal subunit rRNA binding AT4G09730

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G09730

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated