Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0007761 PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Vitis vinifera] Chr2 - View
CSS0027162 PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic isoform X1 [Vitis vinifera] Chr2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G8240 LG-7 + View
Acer truncatum Atru.chr11.1780 chr11 - View
Acer truncatum Atru.chr8.191 chr8 - View
Actinidia chinensis Actinidia38764 Lachesis_group4 + View
Actinidia chinensis Actinidia04902 Lachesis_group1 - View
Actinidia chinensis Actinidia33201 Lachesis_group12 - View
Actinidia chinensis Actinidia17550 Lachesis_group21 - View
Actinidia chinensis Actinidia07837 Lachesis_group10 - View
Arabidopsis lyrata AL1G38670 scaffold_1 + View
Avicennia marina MSTRG.702 ScioBoG_102831_HRSCAF_103044 + View
Avicennia marina MSTRG.7821 ScioBoG_102841_HRSCAF_103114 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M3W608 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT5G39680 Pentatricopeptide repeat (PPR) superfamily protein EMBRYO DEFECTIVE 2744 (EMB2744)%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1)%3B Has 37711 Blast hits to 13427 proteins in 206 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 37%3B Fungi - 23%3B Plants - 37282%3B Viruses - 0%3B Other Eukaryotes - 369 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT1G26820 ribonuclease 3 Encodes ribonuclease RNS3. ribonuclease 3 (RNS3)%3B FUNCTIONS IN: ribonuclease T2 activity%2C endoribonuclease activity%2C RNA binding%3B INVOLVED IN: aging%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 12 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568)%2C Ribonuclease T2%2C active site (InterPro:IPR018188)%3B BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1)%3B Has 2544 Blast hits to 2543 proteins in 498 species: Archae - 0%3B Bacteria - 415%3B Metazoa - 284%3B Fungi - 227%3B Plants - 1506%3B Viruses - 7%3B Other Eukaryotes - 105 (source: NCBI BLink). Chr1 - View
Amborella trichopoda ATR0564G020 AmTr_v1.0_scaffold00010 + View
Brassica carinata BcaC07g41587 ChrC07 + View
Brassica carinata BcaC04g19073 ChrC04 - View
Beta vulgaris EL10Ac6g13210 PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED Chr6_EL10_PGA_scaffold0 + View
Capsicum annuum CAN.G206.166 PGAv.1.6.scaffold206 - View
Capsicum annuum CAN.G473.97 PGAv.1.6.scaffold473 + View
Cannabis sativa CANSAT64G1458 NC_044379.1 - View
Cicer arietinum L. Ca_06770_v3 Ca_LG3_v3 - View
Coffea canephora Cc04_g16580 Pentatricopeptide repeat-containing protein At3g47530 chr4 - View
Coffea canephora Cc11_g12930 Extracellular ribonuclease LE chr11 - View
Citrus clementina Ciclev10031011m.g scaffold_4 + View
Citrus clementina Ciclev10011507m.g scaffold_6 - View
Ceratophyllum demersum CDE08G1436 6 + View
Carpinus fangiana Cfa008975 Cfa03 - View
Cardamine hirsuta CARHR025040 Pentatricopeptide repeat-containing protein Chr1 + View
Carya illinoinensis CiPaw.11G043500 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr11 - View
Carya illinoinensis CiPaw.05G097900 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr05 + View
Citrullus lanatus ClCG10G015070 Pentatricopeptide repeat-containing family protein CG_Chr10 - View
Cucumis melo MELO3C001979.2 pentatricopeptide repeat-containing protein At1g74630 chr12 - View
Cucumis melo MELO3C012100.2 ribonuclease 3-like chr10 - View
Carica papaya Cpa.g.sc18.181 supercontig_18 - View
Carica papaya Cpa.g.sc1.13 supercontig_1 + View
Chenopodium quinoa AUR62032783 RNS1: Ribonuclease 1 C_Quinoa_Scaffold_3751 + View
Chenopodium quinoa AUR62005793 RNS1: Ribonuclease 1 C_Quinoa_Scaffold_1214 + View
Capsella rubella Carub.0001s2415 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 scaffold_1 + View
Capsella rubella Carub.0007s3610 PF13041//PF14432 - PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) scaffold_7 - View
Cucumis sativus L. CsaV3_5G038060 ribonuclease 1-like isoform X2 chr5 + View
Cucumis sativus L. CsaV3_1G005460 Pentatricopeptide repeat chr1 + View
Cucumis sativus L. CsaV3_3G041380 ribonuclease MC-like chr3 - View
Cucumis sativus L. CsaV3_5G032730 Ribonuclease T2-like protein chr5 + View
Daucus carota DCAR_007156 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv33763 GWHABJS00000014 - View
Davidia involucrata Dinv06535 GWHABJS00000012 - View
Durio zibethinus Duzib251G0277 NW_019167971.1 - View
Durio zibethinus Duzib068G0420 NW_019167838.1 - View
Erigeron canadensis ECA233G2882 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA233G1984 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.J01347 Chr10 - View
Eucalyptus grandis Eucgr.G02497 Chr07 - View
Erythranthe guttata Migut.D01808 scaffold_4 + View
Erythranthe guttata Migut.L01287 scaffold_12 - View
Eutrema salsugineum Thhalv10008717m.g 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 scaffold_5 - View
Fragaria x ananassa FAN09G0241 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-2 + View
Fragaria x ananassa FAN22G0963 K01166 - ribonuclease T2 [EC:3.1.27.1] (E3.1.27.1) Fvb4-1 - View
Fragaria x ananassa FAN05G3740 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-3 - View
Fragaria x ananassa FAN08G2911 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5-3 + View
Fragaria x ananassa FAN17G2920 K01166 - ribonuclease T2 [EC:3.1.27.1] (E3.1.27.1) Fvb4-2 + View
Fragaria x ananassa FAN14G1356 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb6-1 - View
Fragaria x ananassa FAN12G1136 PF00445//PF01490//PF01535//PF13041//PF14432 - Ribonuclease T2 family (Ribonuclease_T2) // Transmembrane amino acid transporter protein (Aa_trans) // PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb4-3 + View
Fragaria vesca FvH4_5g14900 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb5 - View
Fragaria vesca FvH4_4g31290 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED Fvb4 - View
Gossypium hirsutum Gohir.A07G205000 PF00533//PF13771//PF13920 - BRCA1 C Terminus (BRCT) domain (BRCT) // PHD-like zinc-binding domain (zf-HC5HC2H) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) A07 - View
Gossypium hirsutum Gohir.D07G211000 K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) D07 - View
Gossypium hirsutum Gohir.A05G366600 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) A05 - View
Glycine max Glyma.17G099500 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Gm17 + View
Glycine max Glyma.20G036100 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED Gm20 - View
Glycine max Glyma.02G107900 PTHR11240//PTHR11240:SF20 - RIBONUCLEASE T2 // SUBFAMILY NOT NAMED Gm02 + View
Glycine max Glyma.18G259800 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm18 - View
Gossypium raimondii Gorai.010G136900 Chr10 + View
Gossypium raimondii Gorai.013G082500 Chr13 - View
Gossypium raimondii Gorai.008G192700 Chr08 - View
Helianthus annuus HanXRQChr08g0210941 Probable ribonuclease 1 HanXRQChr08 - View
Lupinus albus Lalb_Chr04g0256271 Lalb_Chr04 + View
Lupinus albus Lalb_Chr02g0158031 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr02 - View
Lupinus albus Lalb_Chr13g0303221 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Lalb_Chr13 - View
Lupinus albus Lalb_Chr21g0318791 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 Lalb_Chr21 - View
Lupinus albus Lalb_Chr10g0098021 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lalb_Chr10 - View
Lotus japonicus Lj1g0011345 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) chr1 - View
Lotus japonicus Lj2g0003212 PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 + View
Lonicera japonica Lj1P1174T24 GWHAAZE00000001 + View
Lonicera japonica Lj9P463T9 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_1_13321 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_2_88141 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Lsat_1_v8_lg_2 + View
Lactuca sativa Lsat_1_v5_gn_2_92960 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Lsat_1_v8_lg_2 + View
Lactuca sativa Lsat_1_v5_gn_8_52620 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED Lsat_1_v8_lg_8 - View
Lactuca sativa Lsat_1_v5_gn_4_108841 Lsat_1_v8_lg_4 + View
Malus domestica MD17G1053300 Pentatricopeptide repeat (PPR) superfamily protein Chr17 - View
Malus domestica MD13G1071400 Ribonuclease T2 family protein Chr13 - View
Malus domestica MD06G1192600 pentatricopeptide (PPR) repeat-containing protein Chr06 - View
Malus domestica MD16G1072300 ribonuclease 1 Chr16 - View
Malus domestica MD09G1051700 Pentatricopeptide repeat (PPR) superfamily protein Chr09 - View
Manihot esculenta Manes.06G119200 Chromosome06 - View
Manihot esculenta Manes.01G091500 Chromosome01 - View
Manihot esculenta Manes.01G040700 Chromosome01 - View
Manihot esculenta Manes.15G160400 Chromosome15 + View
Medicago truncatula Medtr5g040920 pentatricopeptide (PPR) repeat protein chr5 + View
Nelumbo nucifera Nn3g17246 chr3 + View
Punica granatum PGR119G0008 NC_045132.1 - View
Pisum sativum Psat3g197880 PPR repeat chr3LG5 + View
Papaver somniferum PSO017G3173 NC_039362.1 + View
Populus trichocarpa Potri.017G083900 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr17 - View
Populus trichocarpa Potri.008G086700 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 Chr08 + View
Populus trichocarpa Potri.004G124400 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Chr04 + View
Populus trichocarpa Potri.010G168600 3.1.27.1 - Ribonuclease T(2) / Ribonuclease T2 Chr10 - View
Phaseolus vulgaris Phvul.002G170800 PTHR11240:SF19 - F7A19.32 PROTEIN-RELATED Chr02 - View
Phaseolus vulgaris Phvul.004G029400 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr04 - View
Quercus lobata QL10p016725 10 - View
Quercus lobata QL02p082330 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr4g0439731 RcHm_v2.0_Chr4 - View
Rosa chinensis RcHm_v2.0_Chr2g0168261 RcHm_v2.0_Chr2 + View
Striga asiatica SGA_v2.0_scaffold25G10799 scaffold25 + View
Salvia bowleyana SalBow2G2128 GWHASIU00000007 - View
Salvia bowleyana SalBow1G7280 GWHASIU00000001 - View
Salix brachista Sabra17G0074100 GWHAAZH00000017 - View
Simmondsia chinensis Sc04g0002600 GWHAASQ00000004 - View
Sechium edule Sed0027655 LG11 - View
Sechium edule Sed0017935 LG03 + View
Sechium edule Sed0019109 LG06 - View
Sechium edule Sed0027914 LG06 + View
Schrenkiella parvula Sp1g21880 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) ch1-1 + View
Solanum pennellii Sopen02g038750 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 Spenn-ch02 + View
Selenicereus undatus Hund25231 Scaffold_3410 - View
Selenicereus undatus Hund02656 Scaffold_33678 + View
Trochodendron aralioides TAR371G0300 group13 + View
Theobroma cacao Thecc.04G082600 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_4 - View
Theobroma cacao Thecc.02G350000 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_2 + View
Theobroma cacao Thecc.02G345100 Ribonuclease 3 Chromosome_2 - View
Trifolium pratense TPR.G33599 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI36G0278 NC_052237.1 - View
Vaccinium macrocarpon vmacro16760 Similar to IRX10L: Probable beta-1,4-xylosyltransferase IRX10L (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G3182 CM024074.1 - View
Vigna mungo VMungo0464G1187 CM024077.1 - View
Vigna mungo VMungo0251G2849 CM024069.1 + View
Vitis vinifera GSVIVG01008015001 chr17 - View