Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0046081 PREDICTED: uncharacterized protein LOC104222108 isoform X3 [Nicotiana sylvestris] Chr3 - View
CSS0039587 unnamed protein product [Coffea canephora] Chr6 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G29020 LG-1 - View
Aethionema arabicum Aa31LG5G15830 LG-5 - View
Acer truncatum Atru.chr5.1156 chr5 - View
Acer truncatum Atru.chr2.75 chr2 + View
Actinidia chinensis Actinidia21053 Lachesis_group9 + View
Actinidia chinensis Actinidia24344 Lachesis_group24 + View
Actinidia chinensis Actinidia24828 Lachesis_group15 + View
Actinidia chinensis Actinidia32221 Lachesis_group19 + View
Arabidopsis lyrata AL4G47270 scaffold_4 - View
Amaranthus hybridus Ah.08g213100 E3 ubiquitin-protein ligase RFI2 (EC 2.3.2.27) (Protein RED AND FAR-RED INSENSITIVE 2) AmaHy_arrow1_Scaffold_8 - View
Aquilegia oxysepala Aqoxy2G02961 CHR02 - View
Aquilegia oxysepala Aqoxy5G00748 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XS7LB4 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.19 - View
Arabidopsis thaliana AT2G47700 RING/U-box superfamily protein RED AND FAR-RED INSENSITIVE 2 (RFI2)%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05545.1)%3B Has 457 Blast hits to 456 proteins in 77 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 168%3B Fungi - 17%3B Plants - 198%3B Viruses - 0%3B Other Eukaryotes - 74 (source: NCBI BLink). Chr2 - View
Amborella trichopoda ATR0796G022 AmTr_v1.0_scaffold00045 + View
Brassica carinata BcaB02g08752 ChrB02 + View
Brassica napus C04p00170 C04 + View
Brassica oleracea BolC5t34826H C5 - View
Brassica oleracea BolC4t21664H C4 + View
Beta vulgaris EL10Ac4g09908 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr4_EL10_PGA_scaffold1 - View
Cannabis sativa CANSAT25G3193 NC_044370.1 + View
Corylus avellana Haze_01189 Protein of unknown function 1 - View
Corylus avellana Haze_04134 Similar to RFI2: E3 ubiquitin-protein ligase RFI2 (Arabidopsis thaliana OX%3D3702) 2 - View
Corylus avellana Haze_04921 Similar to RFI2: E3 ubiquitin-protein ligase RFI2 (Arabidopsis thaliana OX%3D3702) 2 + View
Coffea canephora Cc02_g34200 Putative RING/U-box superfamily protein chr2 + View
Citrus clementina Ciclev10001227m.g scaffold_5 + View
Citrus clementina Ciclev10006312m.g scaffold_9 - View
Citrus clementina Ciclev10020382m.g scaffold_3 + View
Carpinus fangiana Cfa006634 Cfa02 + View
Carpinus fangiana Cfa005924 Cfa02 - View
Cardamine hirsuta CARHR143090 RING/U-box superfamily protein Chr4 - View
Carya illinoinensis CiPaw.07G107800 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr07 + View
Corchorus olitorius COL.COLO4_23356 Zinc finger%2C RING-type AWUE01018187.1 - View
Carica papaya Cpa.g.sc9.229 supercontig_9 + View
Chenopodium quinoa AUR62000756 Protein of unknown function C_Quinoa_Scaffold_2088 - View
Chenopodium quinoa AUR62005212 Protein of unknown function C_Quinoa_Scaffold_3820 + View
Capsella rubella Carub.0004s3042 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED scaffold_4 - View
Daucus carota DCAR_002825 hypothetical protein DCARv2_Chr1 + View
Daucus carota DCAR_005796 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv40334 GWHABJS00000005 + View
Davidia involucrata Dinv30819 GWHABJS00000002 + View
Davidia involucrata Dinv44371 GWHABJS00000014 + View
Davidia involucrata Dinv33049 GWHABJS00000010 + View
Durio zibethinus Duzib211G0185 NW_019168049.1 - View
Durio zibethinus Duzib177G1061 NW_019168004.1 + View
Durio zibethinus Duzib128G0926 NW_019168481.1 - View
Durio zibethinus Duzib133G0338 NW_019167938.1 - View
Durio zibethinus Duzib138G0033 NW_019167893.1 - View
Erigeron canadensis ECA236G0210 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.B01912 Chr02 - View
Eutrema salsugineum Thhalv10001505m.g PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED scaffold_22 - View
Gossypium hirsutum Gohir.D08G138700 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED D08 + View
Gossypium hirsutum Gohir.A08G117700 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED A08 + View
Gossypium hirsutum Gohir.A13G109800 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED A13 + View
Gossypium raimondii Gorai.013G126200 Chr13 + View
Gossypium raimondii Gorai.004G142300 Chr04 + View
Hydrangea macrophylla Hma1.2p1_0209F.1_g088440 Hma1.2p1_0209F.1 - View
Lonicera japonica Lj1A26T29 GWHAAZE00000001 - View
Lactuca sativa Lsat_1_v5_gn_8_53500 Lsat_1_v8_lg_8 - View
Magnolia biondii MBI19_g13195_MAGBIO AED:0.12 Chr19 - View
Malus domestica MD04G1199600 RING/U-box superfamily protein Chr04 - View
Malus domestica MD16G1167800 RING/U-box superfamily protein Chr16 + View
Malus domestica MD12G1212400 RING/U-box superfamily protein Chr12 - View
Malus domestica MD13G1167400 RING/U-box superfamily protein Chr13 - View
Manihot esculenta Manes.03G196300 Chromosome03 + View
Manihot esculenta Manes.09G170900 Chromosome09 + View
Nelumbo nucifera Nn3g21468 chr3 + View
Nelumbo nucifera Nn4g25807 chr4 - View
Petunia axillaris Peaxi162Scf00037g01221 RING/U-box superfamily protein Peaxi162Scf00037 + View
Punica granatum PGR004G2206 NC_045131.1 - View
Punica granatum PGR083G1363 NC_045133.1 - View
Prunus persica Prupe.1G134800 Pp01 - View
Prunus persica Prupe.6G320100 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Pp06 - View
Papaver somniferum PSO832G2288 NC_039367.1 - View
Papaver somniferum PSO210G5200 NC_039359.1 + View
Papaver somniferum PSO170G6103 NC_039360.1 + View
Papaver somniferum PSO210G6703 NC_039359.1 - View
Populus trichocarpa Potri.013G015600 PTHR22937//PTHR22937:SF37 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Chr13 - View
Quercus lobata QL06p009106 6 + View
Quercus lobata QL03p020135 3 - View
Quercus lobata QL12p027615 12 + View
Rhododendron simsii Rhsim01G0284400 chr01 + View
Rhododendron simsii Rhsim13G0010900 chr13 - View
Rhododendron simsii Rhsim05G0138600 chr05 - View
Salix brachista Sabra13G0013700 GWHAAZH00000013 - View
Solanum lycopersicum Solyc01g099790.3 RING/U-box superfamily protein (AHRD V3.3 *-* A0A0U9HU46_KLENI) SL4.0ch01 + View
Solanum pennellii Sopen01g043310 RING/U-box superfamily protein | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type , Zinc finger, PHD-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400024717 DNA binding protein ST4.03ch01 + View
Selenicereus undatus Hund18147 Scaffold_33675 + View
Selenicereus undatus Hund05420 Scaffold_19641 + View
Trochodendron aralioides TAR365G1043 group16 - View
Trochodendron aralioides TAR633G2461 group2 + View
Trochodendron aralioides TAR362G0861 group17 - View
Trochodendron aralioides TAR636G1732 group1 - View
Theobroma cacao Thecc.01G299000 DNA binding protein Chromosome_1 + View
Theobroma cacao Thecc.05G313600 RING/U-box superfamily protein Chromosome_5 + View
Theobroma cacao Thecc.04G285900 Uncharacterized protein Chromosome_4 + View
Tarenaya hassleriana THA.LOC104817500 uncharacterized protein LOC104817500 NW_010965946.1 - View
Tripterygium wilfordii TWI23G1185 NC_052239.1 - View
Tripterygium wilfordii TWI59G0139 NC_052248.1 - View
Tripterygium wilfordii TWI73G0262 NC_052232.1 - View
Vaccinium macrocarpon vmacro02456 Similar to RFI2: E3 ubiquitin-protein ligase RFI2 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro15001 Similar to RFI2: E3 ubiquitin-protein ligase RFI2 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01028007001 chr7 - View
Vitis vinifera GSVIVG01031134001 chr14 + View