Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0028625 PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera] Chr11 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G11900 LG-1 - View
Aethionema arabicum Aa31LG5G19940 LG-5 + View
Aethionema arabicum Aa31LG4G15630 LG-4 - View
Acer truncatum Atru.chr3.3966 chr3 + View
Actinidia chinensis Actinidia33778 Lachesis_group20 - View
Arabidopsis lyrata AL5G25510 scaffold_5 - View
Aquilegia oxysepala Aqoxy1G00892 CHR01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.T65TVI PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.18 + View
Arabidopsis thaliana AT5G59550 zinc finger (C3HC4-type RING finger) family protein Encodes an ABA- and drought-induced RING-DUF1117 gene whose mutation results in hyposensitive phenotypes toward ABA in terms of germination rate and stomatal closure and markedly reduced tolerance to drought stress relative to wild-type plants. zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Protein of unknown function DUF1117 (InterPro:IPR010543)%3B BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT3G46620 zinc finger (C3HC4-type RING finger) family protein Encodes an ABA- and drought-induced RING-DUF1117 gene whose mutation results in hyposensitive phenotypes toward ABA in terms of germination rate and stomatal closure and markedly reduced tolerance to drought stress relative to wild-type plants. zinc finger (C3HC4-type RING finger) family protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: response to chitin%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Protein of unknown function DUF1117 (InterPro:IPR010543)%3B BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1)%3B Has 8876 Blast hits to 8844 proteins in 271 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 2388%3B Fungi - 760%3B Plants - 4652%3B Viruses - 43%3B Other Eukaryotes - 1027 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaB01g01001 ChrB01 + View
Brassica carinata BcaC01g01902 ChrC01 + View
Brassica carinata BcaB08g36249 ChrB08 + View
Brassica carinata BcaC03g14003 ChrC03 + View
Brassica napus A02p07070 A02 + View
Brassica napus C03p70780 C03 - View
Brassica oleracea BolC3t19350H C3 - View
Capsicum annuum CAN.G141.4 PGAv.1.6.scaffold141 - View
Cannabis sativa CANSAT54G0572 NC_044375.1 + View
Cicer arietinum L. Ca_20622_v3 Ca_LG6_v3 + View
Corylus avellana Haze_24136 Similar to RDUF1: E3 ubiquitin-protein ligase RDUF1 (Arabidopsis thaliana OX%3D3702) 6 - View
Coffea canephora Cc01_g13220 Putative RING-H2 finger C2A chr1 - View
Citrus clementina Ciclev10028738m.g scaffold_8 - View
Ceratophyllum demersum CDE02G2759 1 - View
Carpinus fangiana Cfa011531 Cfa04 - View
Cardamine hirsuta CARHR155190 RING/U-box superfamily protein Chr5 + View
Carya illinoinensis CiPaw.13G090600 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Chr13 + View
Carya illinoinensis CiPaw.14G066600 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Chr14 + View
Citrullus lanatus ClCG02G020000 RING/U-box superfamily protein LENGTH=320 CG_Chr02 + View
Cucumis melo MELO3C025901.2 E3 ubiquitin-protein ligase RING1 chr11 + View
Corchorus olitorius COL.COLO4_18563 Zinc finger%2C RING-type AWUE01016476.1 - View
Carica papaya Cpa.g.sc81.109 supercontig_81 + View
Chenopodium quinoa AUR62040715 RING1: E3 ubiquitin-protein ligase RING1 C_Quinoa_Scaffold_1465 + View
Capsella rubella Carub.0005s1289 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED scaffold_5 - View
Cucumis sativus L. CsaV3_6G016680 E3 ubiquitin-protein ligase RING1 chr6 + View
Daucus carota DCAR_005954 hypothetical protein DCARv2_Chr2 + View
Durio zibethinus Duzib106G0013 NW_019168492.1 - View
Durio zibethinus Duzib170G0001 NW_019167871.1 + View
Durio zibethinus Duzib168G0321 NW_019168159.1 + View
Erythranthe guttata Migut.F00762 scaffold_6 + View
Eutrema salsugineum Thhalv10016765m.g PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED scaffold_10 - View
Eutrema salsugineum Thhalv10002566m.g PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED scaffold_4 + View
Fragaria x ananassa FAN25G0577 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Fvb3-1 + View
Fragaria x ananassa FAN11G0397 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Fvb3-4 + View
Fragaria x ananassa FAN21G3763 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Fvb3-2 - View
Fragaria vesca FvH4_3g36860 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Fvb3 - View
Gossypium hirsutum Gohir.A04G083500 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED A04 - View
Glycine max Glyma.18G037000 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Gm18 + View
Glycine max Glyma.14G067300 PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Gm14 + View
Glycine max Glyma.02G249100 PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Gm02 - View
Glycine max Glyma.11G220400 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Gm11 - View
Glycine max Glyma.13G338400 PTHR22763//PTHR22763:SF40 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Gm13 - View
Glycine max Glyma.12G060700 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Gm12 + View
Gossypium raimondii Gorai.012G071400 Chr12 + View
Lotus japonicus Lj3g0007871 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED chr3 + View
Lonicera japonica Lj2C1067T7 GWHAAZE00000002 - View
Lonicera japonica Lj1P148T17 GWHAAZE00000001 + View
Lonicera japonica Lj3P965T55 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_9_24621 Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_5_169160 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Lsat_1_v8_lg_5 - View
Lactuca sativa Lsat_1_v5_gn_8_72880 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Lsat_1_v8_lg_8 - View
Magnolia biondii MBI14_g08035_MAGBIO AED:0.00 Chr14 - View
Magnolia biondii MBI05_g29685_MAGBIO AED:0.54 Chr05 - View
Malus domestica MD03G1087100 zinc finger (C3HC4-type RING finger) family protein Chr03 + View
Malus domestica MD11G1096200 zinc finger (C3HC4-type RING finger) family protein Chr11 + View
Manihot esculenta Manes.07G118300 Chromosome07 - View
Manihot esculenta Manes.02G130000 Chromosome02 + View
Medicago truncatula Medtr4g064570 zinc finger (C3HC4-type RING finger) family protein chr4 - View
Oryza sativa ssp. japonica Os03g0271600 Zinc finger, RING/FYVE/PHD-type domain containing protein. chr03 + View
Punica granatum PGR119G1207 NC_045132.1 - View
Punica granatum PGR142G3397 NC_045128.1 - View
Punica granatum PGR044G1582 NC_045134.1 - View
Prunus persica Prupe.6G071800 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Pp06 + View
Populus trichocarpa Potri.001G243300 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Chr01 - View
Populus trichocarpa Potri.008G058100 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Chr08 - View
Populus trichocarpa Potri.009G034800 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Chr09 - View
Phaseolus vulgaris Phvul.L007643 PTHR22763//PTHR22763:SF40 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED scaffold_15 - View
Phaseolus vulgaris Phvul.001G233700 PTHR22763//PTHR22763:SF26 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Chr01 - View
Quercus lobata QL01p030701 1 + View
Rhododendron simsii Rhsim13G0078200 chr13 + View
Salix brachista Sabra09G0024800 GWHAAZH00000009 - View
Simmondsia chinensis Sc10g0001740 GWHAASQ00000010 - View
Sechium edule Sed0000942 LG07 - View
Sapria himalayana SHI22646 scaffold31_7046607 - View
Solanum lycopersicum Solyc06g005650.2 E3 ubiquitin-protein ligase (AHRD V3.3 *** A0A1U8GX66_CAPAN) SL4.0ch06 - View
Schrenkiella parvula Sp6g21250 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED ch6-6 - View
Schrenkiella parvula Sp4g21980 PTHR22763//PTHR22763:SF5 - RING ZINC FINGER PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE CIP8 ch4-6 - View
Schrenkiella parvula Sp5g15060 PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED ch5-1 + View
Solanum pennellii Sopen06g001630 zinc finger (C3HC4-type RING finger) family protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: response to chitin | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type , Protein of unknown function DUF1117 | BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400002153 Zinc finger protein ST4.03ch06 + View
Trochodendron aralioides TAR633G2738 group2 + View
Theobroma cacao Thecc.09G317400 Zinc finger family protein Chromosome_9 + View
Tarenaya hassleriana THA.LOC104799436 E3 ubiquitin-protein ligase RDUF2-like NW_010968505.1 + View
Vaccinium macrocarpon vmacro03040 Similar to RDUF1: E3 ubiquitin-protein ligase RDUF1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01024920001 chr6 - View
Zea mays Zm00001eb397770 Zm00001e038493 Putative RING zinc finger domain superfamily protein 9 - View
Zea mays Zm00001eb012180 Zm00001e001202 Probable E3 ubiquitin-protein ligase RHC2A 1 + View