Gene: AT3G46620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G46620
  • Transcript Identifier AT3G46620.1
  • Gene Type Coding gene
  • Location Chr3 : 17178837-17180024 : negative

Gene Family Information

  • ID HOM05D000082
  • #Genes/#Species 3688/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G46620.1
  • symbol RDUF1
  • Alias AtRDUF1,Arabidopsis thaliana RING and Domain of Unknown Function 1117 1
  • full_name RING and Domain of Unknown Function 1117 1
  • uniprot Q9SNB6

Descriptions

  • Description zinc finger (C3HC4-type RING finger) family protein
  • Computational description zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8876 Blast hits to 8844 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 2388; Fungi - 760; Plants - 4652; Viruses - 43; Other Eukaryotes - 1027 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1
GO:0009738
IEA
GOA Databaseabscisic acid-activated signaling pathway
GO:0010200
IEP
GOA Databaseresponse to chitin
GO:0051865
IDA
Gene Ontologyprotein autoubiquitination2
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid2
GO:0009414
IMP
Gene Ontologyresponse to water deprivation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IEA
GOA Databaseubiquitin protein ligase activity
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity1
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
IBA
Gene Ontologycytoplasm1 3
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus3
GO:0005829
IEA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR039525 E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon
IPR010543 Domain of unknown function DUF1117
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.3.2 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-class ligase activities.BTL-subclass ligase