Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0025532 PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like [Nelumbo nucifera] Chr4 + View
CSS0032231 hypothetical protein POPTR_0007s14270g [Populus trichocarpa] Chr2 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G10950 LG-2 + View
Acer truncatum Atru.chr13.1013 chr13 + View
Acer truncatum Atru.chr3.1248 chr3 + View
Actinidia chinensis Actinidia25309 Lachesis_group11 + View
Actinidia chinensis Actinidia19632 Lachesis_group27 + View
Actinidia chinensis Actinidia29623 Lachesis_group7 + View
Aquilegia oxysepala Aqoxy5G01386 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A7E6XG K16052 - MscS family membrane protein (ynaI, mscMJ, MSL) arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.87VUF2 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RS2Z5K PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.17 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YTZS8L PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT1G58200 MSCS-like 3 A member of MscS-like gene family%2C structurally very similar to MSL2%2C comprising of an N-terminal chloroplast transit peptide%2C five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. MSCS-like 3 (MSL3)%3B FUNCTIONS IN: ion channel activity%3B INVOLVED IN: plastid organization%2C response to osmotic stress%3B LOCATED IN: membrane%2C plastid envelope%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: MSCS-like 2 (TAIR:AT5G10490.1)%3B Has 6506 Blast hits to 5934 proteins in 1329 species: Archae - 154%3B Bacteria - 2583%3B Metazoa - 875%3B Fungi - 404%3B Plants - 332%3B Viruses - 16%3B Other Eukaryotes - 2142 (source: NCBI BLink). MSCS-like 3 (MSL3)%3B FUNCTIONS IN: ion channel activity%3B INVOLVED IN: plastid organization%2C response to osmotic stress%3B LOCATED IN: membrane%2C plastid envelope%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS (InterPro:IPR006685)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B BEST Arabidopsis thaliana protein match is: MSCS-like 2 (TAIR:AT5G10490.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr1 - View
Amborella trichopoda ATR0767G096 AmTr_v1.0_scaffold00033 + View
Brassica napus A01p28230 A01 - View
Capsicum annuum CAN.G475.31 PGAv.1.6.scaffold475 + View
Cannabis sativa CANSAT25G3006 NC_044370.1 - View
Cannabis sativa CANSAT01G0433 NC_044373.1 - View
Cicer arietinum L. Ca_16003_v3 Ca_LG5_v3 - View
Corylus avellana Haze_22455 Similar to MSL3: Mechanosensitive ion channel protein 3, chloroplastic (Arabidopsis thaliana OX%3D3702) 3 - View
Corylus avellana Haze_03869 Similar to MSL2: Mechanosensitive ion channel protein 2, chloroplastic (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc07_g14110 Mechanosensitive ion channel protein 2, chloroplastic chr7 + View
Coffea canephora Cc10_g15870 Mechanosensitive ion channel protein 3, chloroplastic chr10 - View
Citrus clementina Ciclev10024979m.g scaffold_7 + View
Citrus clementina Ciclev10000465m.g scaffold_5 + View
Carpinus fangiana Cfa013793 Cfa05 - View
Carpinus fangiana Cfa006883 Cfa02 + View
Carya illinoinensis CiPaw.08G055600 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Chr08 - View
Carya illinoinensis CiPaw.07G047600 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Chr07 + View
Citrullus lanatus ClCG08G011680 MscS-Like mechanosensitive ion channel MSCL8 CG_Chr08 + View
Cucumis melo MELO3C011088.2 mechanosensitive ion channel protein 3, chloroplastic-like chr03 - View
Corchorus olitorius COL.COLO4_27355 hypothetical protein AWUE01019531.1 - View
Carica papaya Cpa.g.sc21.18 supercontig_21 - View
Chenopodium quinoa AUR62003662 MSL2: Mechanosensitive ion channel protein 2, chloroplastic C_Quinoa_Scaffold_2370 - View
Chenopodium quinoa AUR62017971 MSL2: Mechanosensitive ion channel protein 2, chloroplastic C_Quinoa_Scaffold_3086 - View
Chenopodium quinoa AUR62014345 MSL2: Mechanosensitive ion channel protein 2, chloroplastic C_Quinoa_Scaffold_1566 - View
Cucumis sativus L. CsaV3_2G030270 mechanosensitive ion channel protein 3, chloroplastic-like chr2 + View
Daucus carota DCAR_020021 hypothetical protein DCARv2_Chr6 - View
Davidia involucrata Dinv44859 GWHABJS00000002 - View
Davidia involucrata Dinv36929 GWHABJS00000021 + View
Durio zibethinus Duzib187G1271 NW_019167860.1 - View
Durio zibethinus Duzib041G0751 NW_019167826.1 + View
Durio zibethinus Duzib093G1370 NW_019167937.1 - View
Erigeron canadensis ECA246G4528 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.F02149 Chr06 + View
Erythranthe guttata Migut.H02291 scaffold_8 + View
Fragaria x ananassa FAN19G1530 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-4 + View
Fragaria x ananassa FAN13G0885 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Fvb5-2 + View
Fragaria x ananassa FAN23G1621 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-3 + View
Fragaria x ananassa FAN18G3011 K16052 - MscS family membrane protein (ynaI, mscMJ, MSL) Fvb5-1 + View
Fragaria x ananassa FAN08G1883 K16052 - MscS family membrane protein (ynaI, mscMJ, MSL) Fvb5-3 - View
Fragaria x ananassa FAN26G1746 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-2 + View
Fragaria x ananassa FAN04G2391 K16052 - MscS family membrane protein (ynaI, mscMJ, MSL) Fvb5-4 + View
Fragaria x ananassa FAN28G1217 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Fvb1-1 - View
Fragaria vesca FvH4_5g35370 K16052 - MscS family membrane protein (ynaI, mscMJ, MSL) Fvb5 + View
Gossypium hirsutum Gohir.A06G032500 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED A06 + View
Gossypium hirsutum Gohir.D06G031700 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED D06 + View
Glycine max Glyma.01G023200 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Gm01 + View
Glycine max Glyma.04G094232 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Gm04 - View
Glycine max Glyma.09G199100 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Gm09 - View
Gossypium raimondii Gorai.008G092700 Chr08 - View
Gossypium raimondii Gorai.010G034900 Chr10 + View
Hydrangea macrophylla Hma1.2p1_0125F.1_g058870 Hma1.2p1_0125F.1 + View
Lupinus albus Lalb_Chr09g0325991 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Lalb_Chr09 + View
Lupinus albus Lalb_Chr11g0064991 K16052 - MscS family membrane protein (ynaI, mscMJ, MSL) Lalb_Chr11 + View
Lupinus albus Lalb_Chr08g0242501 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Lalb_Chr08 - View
Lotus japonicus Lj2g0026285 PTHR30566//PTHR30566:SF13 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC chr2 + View
Lonicera japonica Lj4A88G36 GWHAAZE00000004 + View
Magnolia biondii MBI16_g27582_MAGBIO AED:0.13 Chr16 + View
Malus domestica MD08G1197800 MSCS-like 3 Chr08 - View
Malus domestica MD15G1385200 MSCS-like 3 Chr15 - View
Malus domestica MD15G1312300 MSCS-like 2 Chr15 + View
Manihot esculenta Manes.12G126300 Chromosome12 + View
Manihot esculenta Manes.18G058900 Chromosome18 + View
Medicago truncatula Medtr3g100280 mechanosensitive ion channel-like protein chr3 + View
Medicago truncatula Medtr5g032090 mechanosensitive ion channel-like protein chr5 + View
Nelumbo nucifera Nn1g05567 chr1 - View
Nelumbo nucifera Nn5g29885 chr5 + View
Nicotiana tabacum Nitab4.5_0000131g0250 Mechanosensitive ion channel MscS, Like-Sm (LSM) domain Nitab4.5_0000131 + View
Petunia axillaris Peaxi162Scf00454g00521 MSCS-like 3 Peaxi162Scf00454 + View
Punica granatum PGR031G0211 NC_045127.1 + View
Prunus persica Prupe.1G531900 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Pp01 - View
Prunus persica Prupe.6G201500 Pp06 - View
Pisum sativum Psat5g046960 Mechanosensitive ion channel chr5LG3 - View
Papaver somniferum PSO210G4540 NC_039359.1 + View
Papaver somniferum PSO170G5093 NC_039360.1 + View
Populus trichocarpa Potri.005G154000 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Chr05 + View
Populus trichocarpa Potri.002G105900 PTHR30566//PTHR30566:SF12 - YNAI-RELATED MECHANOSENSITIVE ION CHANNEL // SUBFAMILY NOT NAMED Chr02 - View
Phaseolus vulgaris Phvul.009G036900 Chr09 + View
Phaseolus vulgaris Phvul.002G147200 PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Chr02 + View
Quercus lobata QL06p035753 6 - View
Quercus lobata QL09p017767 9 - View
Rosa chinensis RcHm_v2.0_Chr7g0236721 RcHm_v2.0_Chr7 + View
Rosa chinensis RcHm_v2.0_Chr2g0111221 RcHm_v2.0_Chr2 + View
Rhododendron simsii Rhsim07G0211900 chr07 - View
Salvia bowleyana SalBow3G3515 GWHASIU00000006 + View
Salix brachista Sabra02G0083200 GWHAAZH00000002 - View
Simmondsia chinensis Sc03g0000320 GWHAASQ00000003 - View
Sechium edule Sed0016536 LG03 + View
Solanum lycopersicum Solyc04g076300.4 Mechanosensitive ion channel protein 2, chloroplastic (AHRD V3.3 *** A0A2G2X028_CAPBA) SL4.0ch04 - View
Solanum lycopersicum Solyc11g010610.2 Mechanosensitive ion channel protein 2, chloroplastic (AHRD V3.3 *** A0A2G3B0A1_CAPCH) SL4.0ch11 - View
Solanum pennellii Sopen11g005410 A member of MscS-like gene family, structurally very similar to MSL3, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL2-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. | MSCS-like 2 (MSL2) | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM)-related domain , Mechanosensitive ion channel MscS | BEST Arabidopsis thaliana protein match is: MSCS-like 3 . Spenn-ch11 - View
Solanum pennellii Sopen04g030100 A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. | MSCS-like 3 (MSL3) | FUNCTIONS IN: ion channel activity | INVOLVED IN: plastid organization, response to osmotic stress | LOCATED IN: membrane, plastid envelope | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS , Like-Sm ribonucleoprotein (LSM)-related domain | BEST Arabidopsis thaliana protein match is: MSCS-like 2 Spenn-ch04 - View
Solanum tuberosum PGSC0003DMG401009344 Conserved gene of unknown function ST4.03ch04 - View
Selenicereus undatus Hund16530 Scaffold_33677 + View
Trochodendron aralioides TAR381G0079 group11 + View
Trochodendron aralioides TAR376G0910 group14 - View
Theobroma cacao Thecc.08G070800 MSCS-like 3 Chromosome_8 - View
Theobroma cacao Thecc.01G090600 MSCS-like 2 Chromosome_1 + View
Tripterygium wilfordii TWI36G1624 NC_052237.1 + View
Vaccinium macrocarpon vmacro13007 Similar to MSL2: Mechanosensitive ion channel protein 2, chloroplastic (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro04652 Similar to MSL3: Mechanosensitive ion channel protein 3, chloroplastic (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G0727 CM024072.1 + View
Vigna mungo VMungo1215G2394 CM024074.1 + View
Vitis vinifera GSVIVG01009175001 chr18 - View