Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0035799 hypothetical protein POPTR_0005s08520g [Populus trichocarpa] Chr4 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G4740 LG-7 - View
Acer truncatum Atru.chr13.175_Atru.chr13.176 chr13 + View
Actinidia chinensis Actinidia29779 Lachesis_group27 - View
Actinidia chinensis Actinidia37963 Lachesis_group7 - View
Arabidopsis lyrata AL2G36230 scaffold_2 - View
Arabidopsis lyrata AL1G33360 scaffold_1 - View
Amaranthus hybridus Ah.00g000480 AmaHy_arrow1_Contig177_quiver + View
Aquilegia oxysepala Aqoxy6G01855 CHR06 + View
Aquilegia oxysepala Aqoxy5G01064 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.501GHP arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H4T2PX arahy.Tifrunner.gnm1.Arahy.16 + View
Arabidopsis thaliana AT1G76170 2-thiocytidine tRNA biosynthesis protein, TtcA 2-thiocytidine tRNA biosynthesis protein%2C TtcA%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: tRNA processing%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729)%2C Uncharacterised protein family UPF0021%2C C-terminal (InterPro:IPR000541)%2C PP-loop (InterPro:IPR011063)%2C 2-thiocytidine tRNA biosynthesis protein%2C TtcA (InterPro:IPR012089)%3B BEST Arabidopsis thaliana protein match is: repressor of lrx1 (TAIR:AT2G44270.1)%3B Has 4635 Blast hits to 4558 proteins in 1674 species: Archae - 313%3B Bacteria - 3429%3B Metazoa - 162%3B Fungi - 209%3B Plants - 60%3B Viruses - 0%3B Other Eukaryotes - 462 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G20430 hypothetical protein unknown protein%3B Has 29 Blast hits to 29 proteins in 10 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 29%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g47284 ChrC08 + View
Brassica carinata BcaC08g47111 ChrC08 - View
Brassica carinata BcaB07g32046 ChrB07 - View
Brassica napus C06p50120 C06 - View
Brassica napus A07p41740 A07 - View
Brassica oleracea BolC6t40052H C6 - View
Brassica rapa BraA07t31703Z A07 - View
Capsicum annuum CAN.G311.94 PGAv.1.6.scaffold311 - View
Cicer arietinum L. Ca_15420_v3 Ca_LG5_v3 - View
Corylus avellana Haze_22739 Similar to NCS6: Cytoplasmic tRNA 2-thiolation protein 1 (Arabidopsis thaliana OX%3D3702) 3 - View
Coffea canephora Cc10_g00890 Cytoplasmic tRNA 2-thiolation protein 1 chr10 + View
Citrus clementina Ciclev10002910m.g scaffold_5 - View
Ceratophyllum demersum CDE04G0501 2 + View
Carpinus fangiana Cfa014031 Cfa05 - View
Cardamine hirsuta CARHR020890 unknown protein Chr1 - View
Cardamine hirsuta CARHR069720 2-thiocytidine tRNA biosynthesis protein, TtcA Chr2 - View
Carya illinoinensis CiPaw.08G071000 Chr08 - View
Citrullus lanatus ClCG08G013910 Cytoplasmic tRNA 2-thiolation protein CG_Chr08 + View
Citrullus lanatus ClCG05G015240 F5M15.23 CG_Chr05 + View
Cucumis melo MELO3C017006.2 Cytoplasmic tRNA 2-thiolation protein 1-like protein chr07 + View
Cucumis melo MELO3C011328.2 cytoplasmic tRNA 2-thiolation protein 1 chr03 - View
Carica papaya Cpa.g.sc26.233 supercontig_26 + View
Chenopodium quinoa AUR62013834 NCS6: Cytoplasmic tRNA 2-thiolation protein 1 C_Quinoa_Scaffold_1412 + View
Chenopodium quinoa AUR62036770 Protein of unknown function C_Quinoa_Scaffold_3541 - View
Capsella rubella Carub.0002s2306 K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) scaffold_2 - View
Capsella rubella Carub.0001s1990 scaffold_1 - View
Cucumis sativus L. CsaV3_4G037080 Serine/arginine repetitive matrix protein chr4 - View
Daucus carota DCAR_016751 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv39573 GWHABJS00000011 - View
Durio zibethinus Duzib093G0992 NW_019167937.1 - View
Erigeron canadensis ECA233G1055 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.F03540 Chr06 - View
Erythranthe guttata Migut.C00918 scaffold_3 - View
Erythranthe guttata Migut.N03194 scaffold_14 - View
Eutrema salsugineum Thhalv10009140m.g scaffold_5 + View
Eutrema salsugineum Thhalv10018770m.g K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) scaffold_9 + View
Fragaria x ananassa FAN27G2060 KOG2840 - Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily Fvb2-1 + View
Fragaria x ananassa FAN20G1236 Fvb2-3 - View
Fragaria vesca FvH4_2g37771 K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) Fvb2 + View
Gossypium hirsutum Gohir.A05G181300 K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) A05 + View
Gossypium hirsutum Gohir.D05G184300 K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) D05 + View
Glycine max Glyma.06G019700 Gm06 + View
Glycine max Glyma.04G019400 Gm04 + View
Gossypium raimondii Gorai.009G189800 Chr09 + View
Hydrangea macrophylla Hma1.2p1_1100F.1_g257100 Hma1.2p1_1100F.1 + View
Lupinus albus Lalb_Chr01g0008401 Lalb_Chr01 + View
Lupinus albus Lalb_Chr11g0061731 Lalb_Chr11 + View
Lotus japonicus Lj1g0005069 chr1 + View
Lonicera japonica Lj4A14T52 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_8_28281 Lsat_1_v8_lg_8 + View
Magnolia biondii MBI08_g35553_MAGBIO AED:0.32 Chr08 + View
Malus domestica MD15G1004300 repressor of lrx1 Chr15 + View
Malus domestica MD08G1004800 repressor of lrx1 Chr08 + View
Manihot esculenta Manes.05G140800 Chromosome05 + View
Medicago truncatula Medtr3g115060 hypothetical protein chr3 - View
Nelumbo nucifera Nn6g31840 chr6 - View
Nicotiana tabacum Nitab4.5_0000588g0290 Unknown Nitab4.5_0000588 + View
Petunia axillaris Peaxi162Scf00174g01410 conserved hypothetical protein Peaxi162Scf00174 - View
Punica granatum PGR083G0750 NC_045133.1 - View
Prunus persica Prupe.1G356900 K14168 - cytoplasmic tRNA 2-thiolation protein 1 (CTU1, NCS6) Pp01 + View
Pisum sativum Psat5g010840 Cellular nucleobase + nucleoside + nucleotide and nucleic acid metabolic process chr5LG3 - View
Papaver somniferum PSO675G6932 NC_039358.1 - View
Papaver somniferum PSO541G1452 NC_039363.1 - View
Populus trichocarpa Potri.002G013601 Chr02 + View
Phaseolus vulgaris Phvul.009G021100 Chr09 - View
Quercus lobata QL02p013572 CM012294 - View
Rosa chinensis RcHm_v2.0_Chr6g0303941 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim07G0252900 chr07 - View
Rhododendron simsii Rhsim06G0009600 chr06 + View
Striga asiatica SGA_v2.0_scaffold275G46557 scaffold275 - View
Salvia bowleyana SalBow7G2120 GWHASIU00000005 + View
Salix brachista Sabra02G0010600 GWHAAZH00000002 + View
Simmondsia chinensis Sc02g0008960 GWHAASQ00000002 - View
Sechium edule Sed0019383 LG01 + View
Sechium edule Sed0011348 LG11 - View
Solanum lycopersicum Solyc12g094480.3 hypothetical protein (AHRD V3.3 *** AT1G20430.1) SL4.0ch12 - View
Schrenkiella parvula Sp5g31300 ch5-7 - View
Schrenkiella parvula Sp1g18150 ch1-1 - View
Solanum pennellii Sopen04g035780 unknown protein Spenn-ch04 - View
Solanum pennellii Sopen12g031370 unknown protein Spenn-ch12 - View
Solanum tuberosum PGSC0003DMG400029324 Conserved gene of unknown function ST4.03ch12 - View
Solanum tuberosum PGSC0003DMG400009966 Conserved gene of unknown function ST4.03ch04 - View
Selenicereus undatus Hund05132 Scaffold_19641 + View
Trochodendron aralioides TAR381G0186 group11 + View
Trochodendron aralioides TAR376G0763 group14 - View
Trochodendron aralioides TAR628G0269 group5 - View
Theobroma cacao Thecc.08G055000 Chromosome_8 - View
Tarenaya hassleriana THA.LOC104811451 uncharacterized protein LOC104811451 NW_010965372.1 - View
Trifolium pratense TPR.G38106 Tp57577_TGAC_v2_LG7 - View
Tripterygium wilfordii TWI36G1301 NC_052237.1 - View
Tripterygium wilfordii TWI56G1224 NC_052242.1 - View
Vaccinium macrocarpon vmacro04390 Protein of unknown function chr12_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro21838 Similar to NCS6: Cytoplasmic tRNA 2-thiolation protein 1 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G2595 CM024072.1 - View
Vitis vinifera GSVIVG01008705001 chr18 + View