Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0011484 PREDICTED: uncharacterized protein LOC100779109 isoform X1 [Glycine max] Chr5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G1720 LG-8 + View
Actinidia chinensis Actinidia04593 Lachesis_group5 + View
Actinidia chinensis Actinidia35178 Lachesis_group2 - View
Actinidia chinensis Actinidia18844 Lachesis_group9 - View
Actinidia chinensis Actinidia12839 Lachesis_group19 - View
Arabidopsis lyrata AL3G26830 scaffold_3 + View
Avicennia marina MSTRG.15007 ScioBoG_19538_HRSCAF_19626 + View
Arabidopsis thaliana AT1G53650 CTC-interacting domain 8 RNA-binding protein%2C putative%2C similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins. CTC-interacting domain 8 (CID8)%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 9 (TAIR:AT3G14450.1)%3B Has 4564 Blast hits to 3628 proteins in 293 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 2619%3B Fungi - 543%3B Plants - 1016%3B Viruses - 0%3B Other Eukaryotes - 386 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT3G14450 CTC-interacting domain 9 RNA-binding protein%2C putative%2C contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM%2C RBD%2C or RNP domain) (2 copies). Contains PAM PABC binding domain. CTC-interacting domain 9 (CID9)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 7 plant structures%3B EXPRESSED DURING: LP.04 four leaves visible%2C 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C Ataxin-2%2C C-terminal (InterPro:IPR009818)%3B BEST Arabidopsis thaliana protein match is: CTC-interacting domain 8 (TAIR:AT1G53650.2)%3B Has 3508 Blast hits to 2820 proteins in 274 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1915%3B Fungi - 426%3B Plants - 863%3B Viruses - 0%3B Other Eukaryotes - 304 (source: NCBI BLink). Chr3 + View
Brassica carinata BcaC05g29071 ChrC05 - View
Brassica carinata BcaB06g25380 ChrB06 - View
Brassica carinata BcaC08g43546 ChrC08 - View
Brassica napus A06p00890 A06 + View
Brassica napus C05p52830 C05 - View
Brassica napus A01p39260 A01 - View
Brassica napus A05p34920 A05 - View
Brassica oleracea BolC5t33960H C5 - View
Brassica rapa BraA06t23318Z A06 + View
Brassica rapa BraA01t03969Z A01 - View
Brassica rapa BraA05t22306Z A05 - View
Capsicum annuum CAN.G904.19 PGAv.1.6.scaffold904 + View
Cannabis sativa CANSAT56G1515 NC_044371.1 + View
Corylus avellana Haze_08495 Similar to CID9: Polyadenylate-binding protein-interacting protein 9 (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g10230 CTC-interacting domain 9 chr5 + View
Citrus clementina Ciclev10021336m.g scaffold_3 + View
Carpinus fangiana Cfa019452 Cfa08 + View
Cardamine hirsuta CARHR043940 Polyadenylate-binding protein Chr1 - View
Citrullus lanatus ClCG07G010530 CTC-interacting domain 9 protein CG_Chr07 - View
Cucumis melo MELO3C016159.2 polyadenylate-binding protein-interacting protein 9 isoform X1 chr07 - View
Capsella rubella Carub.0001s4292 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) scaffold_1 - View
Capsella rubella Carub.0003s1418 KOG0131//KOG4210 - Splicing factor 3b, subunit 4 // Nuclear localization sequence binding protein scaffold_3 + View
Daucus carota DCAR_021058 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_017565 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv26664 GWHABJS00000013 - View
Davidia involucrata Dinv13308 GWHABJS00000001 + View
Durio zibethinus Duzib187G0262 NW_019167860.1 - View
Durio zibethinus Duzib268G1699 NW_019168270.1 - View
Durio zibethinus Duzib213G0691 NW_019167993.1 - View
Erigeron canadensis ECA236G4998 Conyza_canadensis_scaffold:3 + View
Erigeron canadensis ECA234G0342 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.F03200 Chr06 + View
Erythranthe guttata Migut.M00654 scaffold_13 - View
Erythranthe guttata Migut.H02073 scaffold_8 + View
Eutrema salsugineum Thhalv10021108m.g KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) scaffold_13 - View
Eutrema salsugineum Thhalv10012369m.g KOG0131 - Splicing factor 3b, subunit 4 scaffold_7 + View
Fragaria x ananassa FAN11G0486 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3-4 + View
Fragaria x ananassa FAN21G0920 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3-2 - View
Fragaria x ananassa FAN16G3350 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3-3 - View
Fragaria x ananassa FAN25G1465 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3-1 + View
Fragaria vesca FvH4_3g16680 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Fvb3 - View
Gossypium hirsutum Gohir.D05G333200 KOG0131 - Splicing factor 3b, subunit 4 D05 + View
Gossypium hirsutum Gohir.A01G041600 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) A01 + View
Gossypium hirsutum Gohir.D01G029200 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) D01 + View
Glycine max Glyma.08G176400 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Gm08 + View
Glycine max Glyma.15G249900 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Gm15 - View
Gossypium raimondii Gorai.002G038400 Chr02 + View
Gossypium raimondii Gorai.009G358300 Chr09 + View
Lupinus albus Lalb_Chr25g0285371 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Lalb_Chr25 + View
Lupinus albus Lalb_Chr19g0133581 KOG0114//KOG0131 - Predicted RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 Lalb_Chr19 + View
Lotus japonicus Lj3g0001297 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) chr3 + View
Lonicera japonica Lj8A141G33 GWHAAZE00000008 + View
Lonicera japonica Lj1A809G31 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_5_119861 Lsat_1_v8_lg_5 - View
Lactuca sativa Lsat_1_v5_gn_7_101481 Lsat_1_v8_lg_7 + View
Manihot esculenta Manes.15G102100 Chromosome15 - View
Medicago truncatula Medtr2g070540 CTC-interacting domain protein chr2 + View
Petunia axillaris Peaxi162Scf00000g05836 CTC-interacting domain 9 Peaxi162Scf00000 - View
Petunia axillaris Peaxi162Scf00111g00821 CTC-interacting domain 9 Peaxi162Scf00111 + View
Punica granatum PGR031G3040 NC_045127.1 + View
Prunus persica Prupe.4G149200 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Pp04 - View
Populus trichocarpa Potri.011G095800 PF00076//PF07145 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) Chr11 + View
Populus trichocarpa Potri.001G377500 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Chr01 + View
Phaseolus vulgaris Phvul.005G051500 KOG0131//KOG0148 - Splicing factor 3b, subunit 4 // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) Chr05 - View
Quercus lobata QL04p070520 4 - View
Rhododendron simsii Rhsim06G0184600 chr06 + View
Striga asiatica SGA_v2.0_scaffold4G02135 scaffold4 - View
Striga asiatica SGA_v2.0_scaffold73G24353 scaffold73 - View
Salvia bowleyana SalBow7G2970 GWHASIU00000005 - View
Salix brachista Sabra16G0248700 GWHAAZH00000016 + View
Solanum lycopersicum Solyc07g056590.3 Polyadenylate-binding protein-interacting protein 9 (AHRD V3.3 *** A0A2G2WEN6_CAPBA) SL4.0ch07 + View
Solanum lycopersicum Solyc10g007590.4 Polyadenylate-binding protein-interacting protein 9 (AHRD V3.3 *** A0A2G3BCI2_CAPCH) SL4.0ch10 - View
Schrenkiella parvula Sp3g12760 PF00076//PF07145//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Ataxin-2 C-terminal region (PAM2) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) ch3-1 + View
Solanum pennellii Sopen10g003510 RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain. | CTC-interacting domain 9 (CID9) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 8 Spenn-ch10 - View
Solanum pennellii Sopen07g029940 RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain. | CTC-interacting domain 9 (CID9) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 7 plant structures | EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , Ataxin-2, C-terminal | BEST Arabidopsis thaliana protein match is: CTC-interacting domain 8 Spenn-ch07 + View
Solanum tuberosum PGSC0003DMG400027650 Ctc-interacting domain 9 ST4.03ch07 + View
Trochodendron aralioides TAR627G0222 group6 + View
Theobroma cacao Thecc.07G146900 CTC-interacting domain 9 Chromosome_7 - View
Tarenaya hassleriana THA.LOC104822602 polyadenylate-binding protein-interacting protein 9-like NW_010966725.1 - View
Vaccinium macrocarpon vmacro09433 Similar to CID9: Polyadenylate-binding protein-interacting protein 9 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro12017 Similar to CID9: Polyadenylate-binding protein-interacting protein 9 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View