Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0009848 hypothetical protein CICLE_v10019147mg [Citrus clementina] Chr15 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G10120 LG-2 - View
Acer truncatum Atru.chr9.2444 chr9 + View
Acer truncatum Atru.chr11.2006 chr11 + View
Actinidia chinensis Actinidia15038 Lachesis_group12 + View
Actinidia chinensis Actinidia33056 Lachesis_group13 + View
Actinidia chinensis Actinidia13517 Lachesis_group16 - View
Arabidopsis lyrata AL2G16470 scaffold_2 - View
Amaranthus hybridus Ah.03g132620 AmaHy_arrow1_Scaffold_3 + View
Aquilegia oxysepala Aqoxy3G03021 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J6YH7R PF00514//PF03083//PF04564 - Armadillo/beta-catenin-like repeat (Arm) // Sugar efflux transporter for intercellular exchange (MtN3_slv) // U-box domain (U-box) arahy.Tifrunner.gnm1.Arahy.01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CT4JMD PF00514//PF03083//PF04564 - Armadillo/beta-catenin-like repeat (Arm) // Sugar efflux transporter for intercellular exchange (MtN3_slv) // U-box domain (U-box) arahy.Tifrunner.gnm1.Arahy.11 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.G5G1MY PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT1G10560 plant U-box 18 Encodes a protein containing a UND%2C a U-box%2C and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 18 (PUB18)%3B FUNCTIONS IN: ubiquitin-protein ligase activity%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 9 plant structures%3B EXPRESSED DURING: 4 anthesis%2C LP.10 ten leaves visible%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1)%3B Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0%3B Bacteria - 22%3B Metazoa - 252%3B Fungi - 338%3B Plants - 2172%3B Viruses - 3%3B Other Eukaryotes - 302 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G60190 ARM repeat superfamily protein Encodes PUB19%2C a plant U-box armadillo repeat protein. Involved in salt inhibition of germination together with PUB18. ARM repeat superfamily protein%3B FUNCTIONS IN: ubiquitin-protein ligase activity%2C binding%2C zinc ion binding%3B INVOLVED IN: protein ubiquitination%3B LOCATED IN: ubiquitin ligase complex%3B EXPRESSED IN: 6 plant structures%3B EXPRESSED DURING: 4 anthesis%2C petal differentiation and expansion stage%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C U box domain (InterPro:IPR003613)%2C Armadillo-like helical (InterPro:IPR011989)%2C Armadillo (InterPro:IPR000225)%2C Armadillo-type fold (InterPro:IPR016024)%3B BEST Arabidopsis thaliana protein match is: plant U-box 18 (TAIR:AT1G10560.1)%3B Has 2852 Blast hits to 2737 proteins in 198 species: Archae - 2%3B Bacteria - 22%3B Metazoa - 274%3B Fungi - 109%3B Plants - 2200%3B Viruses - 3%3B Other Eukaryotes - 242 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC09g49419 ChrC09 - View
Brassica carinata BcaB04g20254 ChrB04 + View
Brassica napus C01p36910 C01 + View
Brassica napus A01p29140 A01 + View
Brassica oleracea BolC1t03650H C1 + View
Brassica oleracea BolC5t29629H C5 + View
Brassica rapa BraA06t23936Z A06 + View
Brassica rapa BraA01t02980Z A01 - View
Beta vulgaris EL10Ac6g13663 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr6_EL10_PGA_scaffold0 + View
Beta vulgaris EL10Ac5g10778 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr5_EL10_PGA_scaffold2 - View
Cannabis sativa CANSAT80G2714 NC_044372.1 + View
Cannabis sativa CANSAT01G0385 NC_044373.1 + View
Cicer arietinum L. Ca_04601_v3 Ca_LG2_v3 - View
Corylus avellana Haze_12167 Similar to PUB19: U-box domain-containing protein 19 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc11_g14570 Putative U-box domain-containing protein 19 chr11 + View
Citrus clementina Ciclev10030876m.g scaffold_4 - View
Citrus clementina Ciclev10019147m.g scaffold_3 + View
Carpinus fangiana Cfa019096 Cfa08 + View
Carpinus fangiana Cfa009134 Cfa03 + View
Cardamine hirsuta CARHR010720 U-box domain-containing protein 18 Chr1 + View
Cardamine hirsuta CARHR052760 U-box domain-containing protein 19 Chr2 - View
Carya illinoinensis CiPaw.05G150000 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr05 + View
Citrullus lanatus ClCG05G025250 U-box domain containing protein CG_Chr05 + View
Citrullus lanatus ClCG01G013020 U-box domain-containing protein CG_Chr01 + View
Cucumis melo MELO3C012003.2 RING-type E3 ubiquitin transferase chr10 + View
Cucumis melo MELO3C002253.2 RING-type E3 ubiquitin transferase chr12 - View
Carica papaya Cpa.g.sc69.15 supercontig_69 + View
Chenopodium quinoa AUR62005368 PUB19: U-box domain-containing protein 19 C_Quinoa_Scaffold_1214 + View
Chenopodium quinoa AUR62014020 PUB19: U-box domain-containing protein 19 C_Quinoa_Scaffold_3035 + View
Chenopodium quinoa AUR62030985 PUB19: U-box domain-containing protein 19 C_Quinoa_Scaffold_2689 - View
Capsella rubella Carub.0002s0505 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED scaffold_2 - View
Capsella rubella Carub.0001s1000 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED scaffold_1 + View
Cucumis sativus L. CsaV3_1G008380 RING-type E3 ubiquitin transferase chr1 + View
Cucumis sativus L. CsaV3_5G031630 RING-type E3 ubiquitin transferase chr5 - View
Daucus carota DCAR_026544 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv20672 GWHABJS00000006 + View
Davidia involucrata Dinv15311 GWHABJS00000008 + View
Durio zibethinus Duzib248G1688 NW_019168048.1 - View
Durio zibethinus Duzib205G0533 NW_019168381.1 - View
Durio zibethinus Duzib268G0442 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon NW_019168270.1 + View
Erigeron canadensis ECA233G0075 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.H02615 Chr08 - View
Eucalyptus grandis Eucgr.B00358 Chr02 + View
Erythranthe guttata Migut.E00160 scaffold_5 + View
Eutrema salsugineum Thhalv10023320m.g PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED scaffold_8 - View
Fragaria x ananassa FAN17G0144 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb4-2 + View
Fragaria x ananassa FAN04G0026 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb5-4 + View
Fragaria x ananassa FAN22G2389 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb4-1 - View
Fragaria x ananassa FAN18G3289 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb5-1 + View
Fragaria x ananassa FAN13G1165 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb5-2 + View
Fragaria x ananassa FAN08G0733 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb5-3 - View
Fragaria x ananassa FAN07G1479 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb4-4 + View
Fragaria vesca FvH4_4g34620 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Fvb4 - View
Gossypium hirsutum Gohir.D02G163200 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED D02 - View
Gossypium hirsutum Gohir.A03G140500 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED A03 - View
Glycine max Glyma.02G034200 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Gm02 + View
Glycine max Glyma.17G090900 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Gm17 - View
Gossypium raimondii Gorai.005G183200 Chr05 - View
Helianthus annuus HanXRQChr12g0368541 Putative armadillo-type fold HanXRQChr12 + View
Hydrangea macrophylla Hma1.2p1_0867F.1_g230280 Hma1.2p1_0867F.1 - View
Lupinus albus Lalb_Chr05g0216931 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Lalb_Chr05 - View
Lotus japonicus Lj2g0024014 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED chr2 - View
Lonicera japonica Lj6P804T36 GWHAAZE00000006 + View
Malus domestica MD16G1091300 ARM repeat superfamily protein Chr16 + View
Malus domestica MD13G1090900 plant U-box 18 Chr13 + View
Malus domestica MD06G1177100 ARM repeat superfamily protein Chr06 - View
Manihot esculenta Manes.12G029900 Chromosome12 - View
Manihot esculenta Manes.13G031100 Chromosome13 - View
Manihot esculenta Manes.06G103300 Chromosome06 + View
Medicago truncatula Medtr5g034440 armadillo/beta-catenin repeat protein chr5 - View
Nelumbo nucifera Nn4g22820 chr4 - View
Nelumbo nucifera Nn3g16912 chr3 - View
Nicotiana tabacum Nitab4.5_0000113g0160 Zinc finger, RING/FYVE/PHD-type, Armadillo-type fold, Armadillo-like helical, Armadillo, U box domain Nitab4.5_0000113 - View
Olea europaea Oeu001742.1 chr1 - View
Oryza sativa ssp. japonica Os09g0378700 Similar to ubiquitin-protein ligase. chr09 + View
Petunia axillaris Peaxi162Scf00338g00001 U-box domain-containing protein 18 Peaxi162Scf00338 + View
Punica granatum PGR119G1373 NC_045132.1 + View
Punica granatum PGR083G1090 NC_045133.1 - View
Prunus persica Prupe.5G175800 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Pp05 - View
Prunus persica Prupe.1G255000 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Pp01 - View
Papaver somniferum PSO832G3951 NC_039367.1 - View
Papaver somniferum PSO063G5336 NC_039364.1 - View
Populus trichocarpa Potri.012G078900 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr12 + View
Populus trichocarpa Potri.015G074200 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr15 + View
Phaseolus vulgaris Phvul.003G199200 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr03 + View
Phaseolus vulgaris Phvul.002G072000 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED Chr02 - View
Quercus lobata QL10p012119 10 - View
Quercus lobata QL03p061551 3 - View
Rosa chinensis RcHm_v2.0_Chr7g0193831 RcHm_v2.0_Chr7 - View
Rosa chinensis RcHm_v2.0_Chr4g0443981 RcHm_v2.0_Chr4 - View
Rhododendron simsii Rhsim12G0121400 chr12 - View
Striga asiatica SGA_v2.0_scaffold87G27030 scaffold87 + View
Simmondsia chinensis Sc11g0001230 GWHAASQ00000011 - View
Sechium edule Sed0008043 LG06 + View
Sechium edule Sed0023840 LG04 - View
Solanum lycopersicum Solyc05g005670.1 RING-type E3 ubiquitin transferase (AHRD V3.3 *** A0A2G3B710_CAPCH) SL4.0ch05 - View
Schrenkiella parvula Sp2g04480 PTHR23315:SF116 - U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED ch2-2 - View
Schrenkiella parvula Sp1g09210 PTHR23315//PTHR23315:SF116 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 18-RELATED ch1-1 + View
Solanum pennellii Sopen03g033230 ARM repeat superfamily protein | FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding | INVOLVED IN: protein ubiquitination | LOCATED IN: ubiquitin ligase complex | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , U box domain , Armadillo-like helical , Armadillo , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: plant U-box 18 Spenn-ch03 + View
Solanum pennellii Sopen05g001670 Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | plant U-box 18 (PUB18) | FUNCTIONS IN: ubiquitin-protein ligase activity | INVOLVED IN: protein ubiquitination | LOCATED IN: ubiquitin ligase complex | EXPRESSED IN: 9 plant structures | EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , U box domain , Armadillo-like helical , Armadillo , Armadillo-type fold | BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein Spenn-ch05 - View
Solanum tuberosum PGSC0003DMG400045432 Spotted leaf protein ST4.03ch05 + View
Trochodendron aralioides TAR629G3507 group0 + View
Theobroma cacao Thecc.02G244100 Plant U-box 18 Chromosome_2 - View
Theobroma cacao Thecc.03G009700 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104819507 U-box domain-containing protein 18 NW_010960187.1 + View
Tripterygium wilfordii TWI75G0857 NC_052253.1 + View
Vigna mungo VMungo1215G2056 CM024074.1 - View
Vigna mungo VMungo1215G2548 CM024074.1 - View
Vitis vinifera GSVIVG01020229001 chr1 - View