Gene: AT1G10560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G10560
  • Transcript Identifier AT1G10560.1
  • Gene Type Coding gene
  • Location Chr1 : 3484613-3486706 : positive

Gene Family Information

  • ID HOM05D000215
  • #Genes/#Species 1875/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G10560.1
  • symbol PUB18
  • Alias ATPUB18,ARABIDOPSIS THALIANA PLANT U-BOX 18
  • uniprot Q9XIJ5

Descriptions

  • Description plant U-box 18
  • Computational description plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IDA, IMP
IEA
Gene Ontologyprotein ubiquitination1 2
GO:0016567
IEA
InterProprotein ubiquitination
GO:0009738
IEA
GOA Databaseabscisic acid-activated signaling pathway
GO:0010119
IMP
Gene Ontologyregulation of stomatal movement2
GO:0009787
IMP
Gene Ontologyregulation of abscisic acid-activated signaling pathway2
GO:0010029
IGI
Gene Ontologyregulation of seed germination3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity1
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0061630
IMP
Gene Ontologyubiquitin protein ligase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM, IBA
Gene Ontologycytoplasm4
GO:0016020
IEA
GOA Databasemembrane
GO:0012505
IEA
GOA Databaseendomembrane system
GO:0005634
IBA
Gene Ontologynucleus4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003613 U box domain
IPR000225 Armadillo
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR016024 Armadillo-type fold
IPR011989 Armadillo-like helical
Mapman id Description
19.2.2.1.4.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase