Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0003965 PREDICTED: uncharacterized protein LOC100267264 isoform X1 [Vitis vinifera] Chr4 + View
CSS0003168 unnamed protein product [Coffea canephora] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G12340 LG-1 + View
Acer truncatum Atru.chr3.3737 chr3 + View
Acer truncatum Atru.chr8.2548 chr8 - View
Actinidia chinensis Actinidia03020 Lachesis_group22 - View
Actinidia chinensis Actinidia07100 Lachesis_group13 - View
Actinidia chinensis Actinidia03757 Lachesis_group9 - View
Actinidia chinensis Actinidia00815 Lachesis_group15 - View
Actinidia chinensis Actinidia37283 Lachesis_group24 - View
Arabidopsis lyrata AL4G23040 scaffold_4 + View
Arabidopsis lyrata AL8G36780 scaffold_8 + View
Avicennia marina MSTRG.17855 ScioBoG_19834_HRSCAF_19925 - View
Aquilegia oxysepala Aqoxy4G03171 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.BB6RTX K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) arahy.Tifrunner.gnm1.Arahy.16 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.04G3W2 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L7TZBM K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.XKSF6X K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) arahy.Tifrunner.gnm1.Arahy.03 + View
Arabidopsis thaliana AT5G60170 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 1342 Blast hits to 828 proteins in 247 species: Archae - 0%3B Bacteria - 318%3B Metazoa - 242%3B Fungi - 228%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 402 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1). Chr5 + View
Arabidopsis thaliana AT3G45630 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1)%3B Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0%3B Bacteria - 612%3B Metazoa - 421%3B Fungi - 369%3B Plants - 161%3B Viruses - 3%3B Other Eukaryotes - 675 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT2G28540 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 925 Blast hits to 706 proteins in 218 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 245%3B Fungi - 180%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 940 Blast hits to 717 proteins in 219 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 247%3B Fungi - 180%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 344 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaB02g10169 ChrB02 + View
Brassica carinata BcaB06g28227 ChrB06 + View
Brassica carinata BcaC01g01962 ChrC01 + View
Brassica carinata BcaC04g19661 ChrC04 + View
Brassica carinata BcaC02g08160 ChrC02 - View
Brassica napus A06p21320 A06 + View
Brassica napus C04p57760 C04 + View
Brassica napus C09p52650 C09 + View
Brassica napus C03p13060 C03 - View
Brassica napus A04p21640 A04 + View
Brassica oleracea BolC4t27294H C4 + View
Brassica rapa BraA04t17728Z A04 + View
Brassica rapa BraA03t10447Z A03 - View
Brassica rapa BraA06t25220Z A06 + View
Beta vulgaris EL10Ac9g22397 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Chr9_EL10_PGA_scaffold8 - View
Capsicum annuum CAN.G84.35 PGAv.1.6.scaffold84 - View
Cannabis sativa CANSAT54G1232 NC_044375.1 - View
Cicer arietinum L. Ca_01445_v3 Ca_LG1_v3 + View
Cicer arietinum L. Ca_19232_v3 Ca_LG6_v3 - View
Corylus avellana Haze_20663 Protein of unknown function 10 + View
Corylus avellana Haze_23952 Protein of unknown function 6 + View
Coffea canephora Cc01_g11820 Putative RNA binding (RRM/RBD/RNP motifs) family protein chr1 + View
Citrus clementina Ciclev10027731m.g scaffold_8 + View
Ceratophyllum demersum CDE09G0797 7 + View
Ceratophyllum demersum CDE02G2622 1 - View
Cardamine hirsuta CARHR121550 RNA binding (RRM/RBD/RNP motifs) family protein Chr4 + View
Cardamine hirsuta CARHR273820 CCR4-NOT transcription complex subunit 4 Chr8 + View
Carya illinoinensis CiPaw.13G104800 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Chr13 - View
Citrullus lanatus ClCG02G020770 CCR4-NOT transcription complex subunit CG_Chr02 + View
Cucumis melo MELO3C025725.2 RNA binding (RRM/RBD/RNP motifs) family protein chr11 + View
Corchorus olitorius COL.COLO4_18383 hypothetical protein AWUE01016456.1 + View
Carica papaya Cpa.g.sc139.44 supercontig_139 - View
Chenopodium quinoa AUR62025044 MOT2: General negative regulator of transcription subunit 4 C_Quinoa_Scaffold_4082 + View
Chenopodium quinoa AUR62006483 CNOT4: CCR4-NOT transcription complex subunit 4 C_Quinoa_Scaffold_3429 - View
Capsella rubella Carub.0008s2090 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_8 + View
Capsella rubella Carub.0005s1148 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_5 - View
Capsella rubella Carub.0004s0951 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_4 + View
Cucumis sativus L. CsaV3_6G021850 RNA binding (RRM/RBD/RNP motifs) family protein chr6 - View
Daucus carota DCAR_015568 hypothetical protein DCARv2_Chr4 - View
Daucus carota DCAR_018847 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv11816 GWHABJS00000009 - View
Davidia involucrata Dinv35704 GWHABJS00000015 - View
Davidia involucrata Dinv32813 GWHABJS00000010 + View
Davidia involucrata Dinv31369 GWHABJS00000004 + View
Davidia involucrata Dinv06354 GWHABJS00000007 + View
Davidia involucrata Dinv37245 GWHABJS00000021 + View
Durio zibethinus Duzib168G1585 NW_019168159.1 + View
Durio zibethinus Duzib150G1164 NW_019167882.1 + View
Erigeron canadensis ECA233G0924 Conyza_canadensis_scaffold:1 + View
Eucalyptus grandis Eucgr.J02120 Chr10 - View
Eucalyptus grandis Eucgr.B02454 Chr02 - View
Erythranthe guttata Migut.D02169 scaffold_4 - View
Erythranthe guttata Migut.N02636 scaffold_14 + View
Eutrema salsugineum Thhalv10016186m.g K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_10 + View
Eutrema salsugineum Thhalv10012563m.g K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_2 - View
Fragaria x ananassa FAN05G0878 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb6-3 + View
Fragaria x ananassa FAN25G2198 PF13893//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) // RING/Ubox like zinc-binding domain (zf-RING_4) Fvb3-1 + View
Fragaria x ananassa FAN11G3580 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb3-4 - View
Fragaria x ananassa FAN21G0873 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb3-2 + View
Fragaria x ananassa FAN09G4680 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb6-2 + View
Fragaria x ananassa FAN14G1357 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb6-1 - View
Fragaria x ananassa FAN02G2428 PF00076//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RING/Ubox like zinc-binding domain (zf-RING_4) Fvb6-4 - View
Fragaria x ananassa FAN16G2581 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb3-3 - View
Fragaria vesca FvH4_3g33920 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb3 + View
Fragaria vesca FvH4_6g15190 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb6 - View
Gossypium hirsutum Gohir.D05G100300 PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN D05 - View
Gossypium hirsutum Gohir.D07G097900 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) D07 + View
Gossypium hirsutum Gohir.A05G100500 PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN A05 - View
Gossypium hirsutum Gohir.A07G093300 PF00076//PF13893//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) // RING/Ubox like zinc-binding domain (zf-RING_4) A07 + View
Glycine max Glyma.13G329600 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm13 + View
Glycine max Glyma.12G073200 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm12 + View
Glycine max Glyma.15G044500 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm15 - View
Glycine max Glyma.11G150034 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm11 - View
Glycine max Glyma.13G136500 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm13 - View
Glycine max Glyma.10G048700 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm10 - View
Gossypium raimondii Gorai.013G266000 Chr13 - View
Gossypium raimondii Gorai.001G105300 Chr01 + View
Gossypium raimondii Gorai.009G104400 Chr09 - View
Helianthus annuus HanXRQChr08g0229981 Putative RNA recognition motif domain, eukaryote; Nucleotide-binding alpha-beta plait domain; Zinc finger, RING/FYVE/PHD-type HanXRQChr08 + View
Lupinus albus Lalb_Chr03g0027031 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr03 - View
Lupinus albus Lalb_Chr01g0004061 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr01 - View
Lupinus albus Lalb_Chr14g0374841 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr14 + View
Lupinus albus Lalb_Chr19g0137531 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr19 + View
Lotus japonicus Lj3g0016662 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) chr3 - View
Lonicera japonica Lj1C181T4 GWHAAZE00000001 - View
Lonicera japonica Lj1A925G63 GWHAAZE00000001 + View
Lonicera japonica Lj2C1042G4 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_8_18061 PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN Lsat_1_v8_lg_8 + View
Lactuca sativa Lsat_1_v5_gn_9_20441 Lsat_1_v8_lg_9 + View
Malus domestica MD03G1108000 RNA binding (RRM/RBD/RNP motifs) family protein Chr03 - View
Malus domestica MD04G1105000 RNA binding (RRM/RBD/RNP motifs) family protein Chr04 + View
Malus domestica MD11G1121300 RNA binding (RRM/RBD/RNP motifs) family protein Chr11 - View
Manihot esculenta Manes.11G139600 Chromosome11 - View
Manihot esculenta Manes.04G026900 Chromosome04 + View
Medicago truncatula Medtr4g061180 RNA-binding (RRM/RBD/RNP motif) family protein chr4 + View
Medicago truncatula Medtr1g066970 RNA-binding (RRM/RBD/RNP motif) family protein, putative chr1 + View
Medicago truncatula Medtr2g093100 RNA-binding (RRM/RBD/RNP motif) family protein chr2 - View
Nelumbo nucifera Nn2g12973 chr2 - View
Nelumbo nucifera Nn2g10631 chr2 - View
Nicotiana tabacum Nitab4.5_0000888g0050 Nucleotide-binding, alpha-beta plait, RNA recognition motif domain, eukaryote Nitab4.5_0000888 - View
Nicotiana tabacum Nitab4.5_0000022g0320 RNA recognition motif domain, eukaryote, RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000022 + View
Olea europaea Oeu062274.1 chr13 + View
Petunia axillaris Peaxi162Scf00389g00212 RNA binding (RRM/RBD/RNP motifs) family protein Peaxi162Scf00389 - View
Punica granatum PGR119G2367 NC_045132.1 + View
Punica granatum PGR102G3367 NC_045129.1 - View
Prunus persica Prupe.6G091300 Pp06 - View
Prunus persica Prupe.6G242300 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Pp06 + View
Pisum sativum Psat5g276760 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 - View
Pisum sativum Psat7g221920 RING/Ubox like zinc-binding domain chr7LG7 + View
Papaver somniferum PSO339G1092 NC_039366.1 + View
Populus trichocarpa Potri.016G084700 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Chr16 - View
Populus trichocarpa Potri.006G132300 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Chr06 + View
Phaseolus vulgaris Phvul.011G071200 Chr11 - View
Quercus lobata QL01p035905 1 - View
Quercus lobata QL07p045416 7 + View
Rosa chinensis RcHm_v2.0_Chr3g0468541 RcHm_v2.0_Chr3 - View
Rosa chinensis RcHm_v2.0_Chr5g0061481 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim01G0221800 chr01 + View
Rhododendron simsii RhsimUnG0138900 ctg341 + View
Rhododendron simsii Rhsim13G0090500 chr13 - View
Striga asiatica SGA_v2.0_scaffold61G21188 scaffold61 + View
Salvia bowleyana SalBow3G2001 GWHASIU00000006 - View
Salvia bowleyana SalBow3G0541 GWHASIU00000006 + View
Salix brachista Sabra16G0091500 GWHAAZH00000016 - View
Sechium edule Sed0025423 LG01 - View
Sechium edule Sed0023055 LG05 - View
Sapria himalayana SHI06012 scaffold2_22354274 + View
Solanum lycopersicum Solyc11g072590.3 RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** Q9M1E4_ARATH) SL4.0ch11 + View
Solanum lycopersicum Solyc06g005190.4 RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** Q9M1E4_ARATH) SL4.0ch06 + View
Schrenkiella parvula Sp4g11360 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) ch4-6 + View
Solanum pennellii Sopen11g030240 RNA binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Zinc finger, RING-type , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein Spenn-ch11 + View
Solanum tuberosum PGSC0003DMG400030059 RNA recognition motif-containing protein ST4.03ch06 - View
Trochodendron aralioides TAR636G3427 group1 + View
Trochodendron aralioides TAR623G1444 group7 + View
Trochodendron aralioides TAR369G0440 group18 - View
Trochodendron aralioides TAR633G1817 group2 - View
Theobroma cacao Thecc.09G336200 RNA binding family protein Chromosome_9 - View
Theobroma cacao Thecc.05G053100 RNA binding family protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104810834 uncharacterized protein LOC104810834 isoform X1 NW_010965304.1 + View
Tarenaya hassleriana THA.LOC104799481 uncharacterized protein LOC104799481 isoform X1 NW_010968505.1 + View
Trifolium pratense TPR.G11610 Tp57577_TGAC_v2_LG7 - View
Trifolium pratense TPR.G2975 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI75G0843 NC_052253.1 - View
Tripterygium wilfordii TWI79G1131 NC_052238.1 - View
Utricularia gibba unitig_0.g1524 unitig_0 + View
Utricularia gibba unitig_747.g22011 unitig_747 + View
Vaccinium macrocarpon vmacro03146 Similar to CNOT4: CCR4-NOT transcription complex subunit 4 (Homo sapiens OX%3D9606) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro14484 Similar to CNOT4: CCR4-NOT transcription complex subunit 4 (Homo sapiens OX%3D9606) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1080G1499 CM024079.1 - View
Vigna mungo VMungo1127G1737 CM024076.1 - View
Vitis vinifera GSVIVG01025102001 chr6 + View
Vitis vinifera GSVIVG01025550001 chr8 + View