Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0037274 hydroxymethylbutenyl diphosphate synthase [Camellia sinensis] Contig279 - View
CSS0023686 hydroxymethylbutenyl diphosphate synthase [Camellia sinensis] Chr11 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G12580 LG-1 + View
Acer truncatum Atru.BG.119.p chr3 - View
Actinidia chinensis Actinidia20454 Lachesis_group15 + View
Actinidia chinensis Actinidia03730 Lachesis_group9 - View
Arabidopsis lyrata AL8G37190 scaffold_8 + View
Avicennia marina MSTRG.17806 ScioBoG_19834_HRSCAF_19925 - View
Amaranthus hybridus Ah.01g014360 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (EC 1.17.7.1) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (Protein CHLOROPLAST BIOGENESIS 4) (Protein CONSTITUTIVE SUBTILISIN 3) AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy1G01246 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.VBZF8N K03526 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (gcpE, ispG) arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.X2DMBM K03526 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (gcpE, ispG) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.068WZH PTHR30454//PTHR30454:SF0 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE // 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ETHX4E PTHR30454//PTHR30454:SF0 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE // 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.18 + View
Arabidopsis thaliana AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS)%2C catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2%2C4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light%2C the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however%2C the enzyme requires an electron shuttle: ferredoxin-NADP%3Csup%3E+%3C/sup%3E reductase. 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS)%3B FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity%2C 4 iron%2C 4 sulfur cluster binding%3B INVOLVED IN: response to light stimulus%2C isoprenoid biosynthetic process%2C isopentenyl diphosphate biosynthetic process%2C mevalonate-independent pathway%2C response to bacterium%2C systemic acquired resistance%2C salicylic acid mediated signaling pathway%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005)%2C 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C atypical (InterPro:IPR017178)%2C 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type (InterPro:IPR004588)%3B Has 12699 Blast hits to 7350 proteins in 2074 species: Archae - 0%3B Bacteria - 8133%3B Metazoa - 2%3B Fungi - 2%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 4490 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaB08g36355 ChrB08 + View
Brassica carinata BcaC04g19719 ChrC04 + View
Brassica napus C09p53300 C09 + View
Brassica napus A10p17790 A10 + View
Brassica oleracea BolC9t58204H C9 + View
Brassica rapa BraA10t43856Z A10 + View
Beta vulgaris EL10Ac9g22507 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr9_EL10_PGA_scaffold8 + View
Capsicum annuum CAN.G631.24 PGAv.1.6.scaffold631 + View
Cannabis sativa CANSAT54G2863 NC_044375.1 + View
Cicer arietinum L. Ca_01417_v3 Ca_LG1_v3 - View
Corylus avellana Haze_23837 Similar to ISPG: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (Arabidopsis thaliana OX%3D3702) 6 - View
Coffea canephora Cc01_g11160 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic chr1 - View
Citrus clementina Ciclev10027881m.g scaffold_8 - View
Cardamine hirsuta CARHR274260 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr8 + View
Carya illinoinensis CiPaw.14G080300 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr14 + View
Carya illinoinensis CiPaw.13G112600 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr13 + View
Cucumis melo MELO3C005061.2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase chr12 - View
Carica papaya Cpa.g.sc216.13 supercontig_216 - View
Capsella rubella Carub.0008s2128 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase scaffold_8 + View
Cucumis sativus L. CsaV3_1G012820 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase chr1 - View
Daucus carota DCAR_015537 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase DCARv2_Chr4 + View
Daucus carota DCAR_006060 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase DCARv2_Chr2 + View
Davidia involucrata Dinv32749 GWHABJS00000010 - View
Durio zibethinus Duzib168G1617 NW_019168159.1 - View
Erigeron canadensis ECA238G4788 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.B02495 Chr02 + View
Erythranthe guttata Migut.N02606 scaffold_14 - View
Eutrema salsugineum Thhalv10012774m.g 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase scaffold_2 - View
Fragaria x ananassa FAN25G3839 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Fvb3-1 + View
Fragaria x ananassa FAN16G0818 PTHR30454:SF0 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC Fvb3-3 - View
Fragaria x ananassa FAN11G2723 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Fvb3-4 + View
Fragaria x ananassa FAN21G2260 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Fvb3-2 - View
Fragaria vesca FvH4_3g32460 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Fvb3 - View
Gossypium hirsutum Gohir.D08G214700 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase D08 + View
Gossypium hirsutum Gohir.A08G197500 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase A08 + View
Glycine max Glyma.13G326400 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Gm13 - View
Glycine max Glyma.12G173200 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Gm12 - View
Gossypium raimondii Gorai.004G228600 Chr04 + View
Helianthus annuus HanXRQChr14g0452871 Probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic HanXRQChr14 - View
Lupinus albus Lalb_Chr14g0374701 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Lalb_Chr14 - View
Lupinus albus Lalb_Chr03g0027311 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Lalb_Chr03 + View
Lupinus albus Lalb_Chr24g0394611 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Lalb_Chr24 + View
Lotus japonicus Lj3g0003128 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase chr3 - View
Lonicera japonica Lj2C1029G11 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_2_98360 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Lsat_1_v8_lg_2 - View
Malus domestica MD03G1117300 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Chr03 + View
Malus domestica MD11G1135000 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Chr11 + View
Manihot esculenta Manes.04G021700 Chromosome04 - View
Manihot esculenta Manes.11G144700 Chromosome11 + View
Medicago truncatula Medtr2g094160 4-hydroxy-3-methylbut-2-enyl diphosphate synthase chr2 + View
Nelumbo nucifera Nn2g10781 chr2 + View
Nicotiana tabacum Nitab4.5_0000650g0220 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical, Aldolase-type TIM barrel Nitab4.5_0000650 + View
Olea europaea Oeu059093.1 chr20 + View
Petunia axillaris Peaxi162Scf00270g00819 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Peaxi162Scf00270 - View
Punica granatum PGR102G1912 NC_045129.1 + View
Prunus persica Prupe.6G101000 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Pp06 + View
Pisum sativum Psat5g278240 GcpE protein chr5LG3 + View
Papaver somniferum PSO384G0735 NC_039368.1 - View
Papaver somniferum PSO339G0771 NC_039366.1 - View
Populus trichocarpa Potri.009G013400 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr09 + View
Populus trichocarpa Potri.004G210400 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr04 - View
Phaseolus vulgaris Phvul.005G135800 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Chr05 - View
Quercus lobata QL01p022296 1 - View
Rhododendron simsii Rhsim01G0217200 chr01 - View
Salvia bowleyana SalBow3G4399 GWHASIU00000006 + View
Salix brachista Sabra09G0008100 GWHAAZH00000009 - View
Salix brachista Sabra04G0142000 GWHAAZH00000004 - View
Simmondsia chinensis Sc06g0010150 GWHAASQ00000006 + View
Solanum lycopersicum Solyc11g069380.2 GcpE SL4.0ch11 + View
Schrenkiella parvula Sp6g22170 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase ch6-6 + View
Solanum pennellii Sopen11g028100 Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP Spenn-ch11 + View
Solanum tuberosum PGSC0003DMG400008050 GcpE ST4.03ch11 - View
Trochodendron aralioides TAR633G1103 group2 - View
Theobroma cacao Thecc.09G340000 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Chromosome_9 + View
Tarenaya hassleriana THA.LOC104810855 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin)%2C chloroplastic NW_010965304.1 + View
Trifolium pratense TPR.G11486 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI31G1183 NC_052233.1 + View
Tripterygium wilfordii TWI79G1123 NC_052238.1 + View
Vaccinium macrocarpon vmacro14439 Similar to ISPG: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G1181 CM024079.1 + View
Vitis vinifera GSVIVG01025182001 chr6 - View